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POTEKP (POTE ankyrin domain family member K, pseudogene)

Identity

Alias_namesACTBL3
POTEK
actin, beta-like 3
POTE ankyrin domain family, member K
POTE ankyrin domain family, member K, pseudogene
Alias_symbol (synonym)FKSG30
POTE2delta
Other aliasACT
HGNC (Hugo) POTEKP
LocusID (NCBI) 440915
Atlas_Id 72092
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 131626115 and ends at 131627515 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POTEKP   30182
Cards
Entrez_Gene (NCBI)POTEKP  440915  POTE ankyrin domain family member K, pseudogene
AliasesACT; ACTBL3; POTE2delta; POTEK
GeneCards (Weizmann)POTEKP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:131626115-131627515 [Contig_View]  POTEKP [Vega]
TCGA cBioPortalPOTEKP
AceView (NCBI)POTEKP
Genatlas (Paris)POTEKP
WikiGenes440915
SOURCE (Princeton)POTEKP
Genetics Home Reference (NIH)POTEKP
Genomic and cartography
GoldenPath hg38 (UCSC)POTEKP  -     chr2:131626115-131627515 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POTEKP  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblPOTEKP - 2q21.1 [CytoView hg19]  POTEKP - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBIPOTEKP [Mapview hg19]  POTEKP [Mapview hg38]
OMIM611266   
Gene and transcription
Genbank (Entrez)AY014272 BM763453 HM358967 HM358970 HM358980
RefSeq transcript (Entrez)NM_001017421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POTEKP
Cluster EST : UnigeneHs.631267 [ NCBI ]
CGAP (NCI)Hs.631267
Gene ExpressionPOTEKP [ NCBI-GEO ]   POTEKP [ EBI - ARRAY_EXPRESS ]   POTEKP [ SEEK ]   POTEKP [ MEM ]
Gene Expression Viewer (FireBrowse)POTEKP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440915
GTEX Portal (Tissue expression)POTEKP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYX7
Splice isoforms : SwissVarQ9BYX7
PhosPhoSitePlusQ9BYX7
Domaine pattern : Prosite (Expaxy)ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    Actin_CS   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)POTEKP
DMDM Disease mutations440915
Blocks (Seattle)POTEKP
SuperfamilyQ9BYX7
Peptide AtlasQ9BYX7
HPRD18642
IPIIPI00888712   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYX7
IntAct (EBI)Q9BYX7
BioGRIDPOTEKP
STRING (EMBL)POTEKP
ZODIACPOTEKP
Ontologies - Pathways
QuickGOQ9BYX7
Ontology : AmiGOplatelet degranulation  ATP binding  extracellular region  cytosol  cytoskeleton  extracellular exosome  
Ontology : EGO-EBIplatelet degranulation  ATP binding  extracellular region  cytosol  cytoskeleton  extracellular exosome  
NDEx NetworkPOTEKP
Atlas of Cancer Signalling NetworkPOTEKP
Wikipedia pathwaysPOTEKP
Orthology - Evolution
OrthoDB440915
Phylogenetic Trees/Animal Genes : TreeFamPOTEKP
HOVERGENQ9BYX7
HOGENOMQ9BYX7
Homologs : HomoloGenePOTEKP
Homology/Alignments : Family Browser (UCSC)POTEKP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOTEKP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POTEKP
dbVarPOTEKP
ClinVarPOTEKP
1000_GenomesPOTEKP 
Exome Variant ServerPOTEKP
ExAC (Exome Aggregation Consortium)POTEKP (select the gene name)
Genetic variants : HAPMAP440915
Genomic Variants (DGV)POTEKP [DGVbeta]
DECIPHERPOTEKP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOTEKP 
Mutations
ICGC Data PortalPOTEKP 
TCGA Data PortalPOTEKP 
Broad Tumor PortalPOTEKP
OASIS PortalPOTEKP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOTEKP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POTEKP
DgiDB (Drug Gene Interaction Database)POTEKP
DoCM (Curated mutations)POTEKP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POTEKP (select a term)
intoGenPOTEKP
Cancer3DPOTEKP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611266   
Orphanet
MedgenPOTEKP
Genetic Testing Registry POTEKP
NextProtQ9BYX7 [Medical]
TSGene440915
GENETestsPOTEKP
Target ValidationPOTEKP
Huge Navigator POTEKP [HugePedia]
snp3D : Map Gene to Disease440915
BioCentury BCIQPOTEKP
ClinGenPOTEKP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440915
Chemical/Pharm GKB GenePA142672652
Clinical trialPOTEKP
Miscellaneous
canSAR (ICR)POTEKP (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOTEKP
EVEXPOTEKP
GoPubMedPOTEKP
iHOPPOTEKP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:59 CEST 2017

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