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POTEM (POTE ankyrin domain family member M)

Identity

Alias_namesPOTE ankyrin domain family
Alias_symbol (synonym)POTE14beta
P704P
ACT
Other alias
HGNC (Hugo) POTEM
LocusID (NCBI) 641455
Atlas_Id 50475
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 18967434 and ends at 19003752 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POTEM   37096
Cards
Entrez_Gene (NCBI)POTEM  641455  POTE ankyrin domain family member M
AliasesACT; P704P; POTE14beta
GeneCards (Weizmann)POTEM
Ensembl hg19 (Hinxton)ENSG00000187537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187537 [Gene_View]  chr14:18967434-19003752 [Contig_View]  POTEM [Vega]
ICGC DataPortalENSG00000187537
TCGA cBioPortalPOTEM
AceView (NCBI)POTEM
Genatlas (Paris)POTEM
WikiGenes641455
SOURCE (Princeton)POTEM
Genetics Home Reference (NIH)POTEM
Genomic and cartography
GoldenPath hg38 (UCSC)POTEM  -     chr14:18967434-19003752 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POTEM  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblPOTEM - 14q11.2 [CytoView hg19]  POTEM - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIPOTEM [Mapview hg19]  POTEM [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY338952 BC063888 HM358945 HM358955 HM358968
RefSeq transcript (Entrez)NM_001145442
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POTEM
Cluster EST : UnigeneHs.654289 [ NCBI ]
CGAP (NCI)Hs.654289
Alternative Splicing GalleryENSG00000187537
Gene ExpressionPOTEM [ NCBI-GEO ]   POTEM [ EBI - ARRAY_EXPRESS ]   POTEM [ SEEK ]   POTEM [ MEM ]
Gene Expression Viewer (FireBrowse)POTEM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)641455
GTEX Portal (Tissue expression)POTEM
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NI47   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NI47  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NI47
Splice isoforms : SwissVarA6NI47
PhosPhoSitePlusA6NI47
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)POTEM
DMDM Disease mutations641455
Blocks (Seattle)POTEM
SuperfamilyA6NI47
Human Protein AtlasENSG00000187537
Peptide AtlasA6NI47
IPIIPI00479559   IPI01026395   IPI00878532   IPI00940675   IPI00893501   
Protein Interaction databases
DIP (DOE-UCLA)A6NI47
IntAct (EBI)A6NI47
FunCoupENSG00000187537
BioGRIDPOTEM
STRING (EMBL)POTEM
ZODIACPOTEM
Ontologies - Pathways
QuickGOA6NI47
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPOTEM
Atlas of Cancer Signalling NetworkPOTEM
Wikipedia pathwaysPOTEM
Orthology - Evolution
OrthoDB641455
GeneTree (enSembl)ENSG00000187537
Phylogenetic Trees/Animal Genes : TreeFamPOTEM
HOVERGENA6NI47
HOGENOMA6NI47
Homologs : HomoloGenePOTEM
Homology/Alignments : Family Browser (UCSC)POTEM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOTEM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POTEM
dbVarPOTEM
ClinVarPOTEM
1000_GenomesPOTEM 
Exome Variant ServerPOTEM
ExAC (Exome Aggregation Consortium)POTEM (select the gene name)
Genetic variants : HAPMAP641455
Genomic Variants (DGV)POTEM [DGVbeta]
DECIPHERPOTEM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOTEM 
Mutations
ICGC Data PortalPOTEM 
TCGA Data PortalPOTEM 
Broad Tumor PortalPOTEM
OASIS PortalPOTEM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOTEM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOTEM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POTEM
DgiDB (Drug Gene Interaction Database)POTEM
DoCM (Curated mutations)POTEM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POTEM (select a term)
intoGenPOTEM
Cancer3DPOTEM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOTEM
Genetic Testing Registry POTEM
NextProtA6NI47 [Medical]
TSGene641455
GENETestsPOTEM
Huge Navigator POTEM [HugePedia]
snp3D : Map Gene to Disease641455
BioCentury BCIQPOTEM
ClinGenPOTEM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641455
Chemical/Pharm GKB GenePA165479276
Clinical trialPOTEM
Miscellaneous
canSAR (ICR)POTEM (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOTEM
EVEXPOTEM
GoPubMedPOTEM
iHOPPOTEM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:32:08 CEST 2017

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