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POU2F2 (POU class 2 homeobox 2)

Identity

Other namesOCT2
OTF2
Oct-2
HGNC (Hugo) POU2F2
LocusID (NCBI) 5452
Location 19q13.2
Location_base_pair Starts at 42590262 and ends at 42636625 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)POU2F2   9213
Cards
Entrez_Gene (NCBI)POU2F2  5452  POU class 2 homeobox 2
GeneCards (Weizmann)POU2F2
Ensembl (Hinxton)ENSG00000028277 [Gene_View]  chr19:42590262-42636625 [Contig_View]  POU2F2 [Vega]
ICGC DataPortalENSG00000028277
AceView (NCBI)POU2F2
Genatlas (Paris)POU2F2
WikiGenes5452
SOURCE (Princeton)NM_001207025 NM_001207026 NM_001247994 NM_002698
Genomic and cartography
GoldenPath (UCSC)POU2F2  -  19q13.2   chr19:42590262-42636625 -  19q13.2   [Description]    (hg19-Feb_2009)
EnsemblPOU2F2 - 19q13.2 [CytoView]
Mapping of homologs : NCBIPOU2F2 [Mapview]
OMIM164176   
Gene and transcription
Genbank (Entrez)AA832036 BC006101 BF062323 BT007438 CB995118
RefSeq transcript (Entrez)NM_001207025 NM_001207026 NM_001247994 NM_002698
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_030365 NT_011109 NW_001838496 NW_004929415
Consensus coding sequences : CCDS (NCBI)POU2F2
Cluster EST : UnigeneHs.147381 [ NCBI ]
CGAP (NCI)Hs.147381
Alternative Splicing : Fast-db (Paris)GSHG0015855
Alternative Splicing GalleryENSG00000028277
Gene ExpressionPOU2F2 [ NCBI-GEO ]     POU2F2 [ SEEK ]   POU2F2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09086 (Uniprot)
NextProtP09086  [Medical]
With graphics : InterProP09086
Splice isoforms : SwissVarP09086 (Swissvar)
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    POU_1 (PS00035)    POU_2 (PS00465)    POU_3 (PS51179)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeodomain-like    Lambda_DNA-bd_dom    POU    POU_specific    TF_octamer   
Related proteins : CluSTrP09086
Domain families : Pfam (Sanger)Homeobox (PF00046)    Pou (PF00157)   
Domain families : Pfam (NCBI)pfam00046    pfam00157   
Domain families : Smart (EMBL)HOX (SM00389)  POU (SM00352)  
DMDM Disease mutations5452
Blocks (Seattle)P09086
PDB (SRS)1HDP   
PDB (PDBSum)1HDP   
PDB (IMB)1HDP   
PDB (RSDB)1HDP   
Human Protein AtlasENSG00000028277
Peptide AtlasP09086
HPRD01251
IPIIPI00012533   IPI00221055   IPI00335926   IPI00888702   IPI00953226   IPI00383606   IPI00002666   IPI00980009   IPI00976101   IPI01009291   
Protein Interaction databases
DIP (DOE-UCLA)P09086
IntAct (EBI)P09086
FunCoupENSG00000028277
BioGRIDPOU2F2
InParanoidP09086
Interologous Interaction database P09086
IntegromeDBPOU2F2
STRING (EMBL)POU2F2
Ontologies - Pathways
Ontology : AmiGOmature B cell differentiation  immunoglobulin secretion involved in immune response  sequence-specific DNA binding transcription factor activity  nucleus  cytoplasm  transcription from RNA polymerase II promoter  humoral immune response  protein domain specific binding  sequence-specific DNA binding  positive regulation of transcription, DNA-templated  cell maturation  
Ontology : EGO-EBImature B cell differentiation  immunoglobulin secretion involved in immune response  sequence-specific DNA binding transcription factor activity  nucleus  cytoplasm  transcription from RNA polymerase II promoter  humoral immune response  protein domain specific binding  sequence-specific DNA binding  positive regulation of transcription, DNA-templated  cell maturation  
Protein Interaction DatabasePOU2F2
Wikipedia pathwaysPOU2F2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)POU2F2
SNP (GeneSNP Utah)POU2F2
SNP : HGBasePOU2F2
Genetic variants : HAPMAPPOU2F2
1000_GenomesPOU2F2 
ICGC programENSG00000028277 
CONAN: Copy Number AnalysisPOU2F2 
Somatic Mutations in Cancer : COSMICPOU2F2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDPOU2F2
OMIM164176   
MedgenPOU2F2
GENETestsPOU2F2
Disease Genetic AssociationPOU2F2
Huge Navigator POU2F2 [HugePedia]  POU2F2 [HugeCancerGEM]
Genomic VariantsPOU2F2  POU2F2 [DGVbeta]
Exome VariantPOU2F2
dbVarPOU2F2
ClinVarPOU2F2
snp3D : Map Gene to Disease5452
General knowledge
Homologs : HomoloGenePOU2F2
Homology/Alignments : Family Browser (UCSC)POU2F2
Phylogenetic Trees/Animal Genes : TreeFamPOU2F2
Chemical/Protein Interactions : CTD5452
Chemical/Pharm GKB GenePA33537
Clinical trialPOU2F2
Cancer Resource (Charite)ENSG00000028277
Other databases
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
CoreMinePOU2F2
iHOPPOU2F2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:09:29 CEST 2014

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