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POU5F1 (POU class 5 homeobox 1)

Identity

Alias (NCBI)OCT3
OCT4
OTF-3
OTF3
OTF4
Oct-3
Oct-4
HGNC (Hugo) POU5F1
HGNC Alias symbOCT3
Oct4
MGC22487
HGNC Previous nameOTF3
HGNC Previous namePOU domain class 5, transcription factor 1
LocusID (NCBI) 5460
Atlas_Id 43916
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31164337 and ends at 31167170 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EWSR1 (22q12.2)::POU5F1 (6p21.33)FUS (16p11.2)::POU5F1 (6p21.33)POU5F1 (6p21.33)::EWSR1 (22q12.2)
POU5F1 (6p21.33)::SARS (1p13.3)EWSR1 22q12.2::POU5F1 6p21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)POU5F1   9221
Cards
Entrez_Gene (NCBI)POU5F1    POU class 5 homeobox 1
AliasesOCT3; OCT4; OTF-3; OTF3; 
OTF4; Oct-3; Oct-4
GeneCards (Weizmann)POU5F1
Ensembl hg19 (Hinxton)ENSG00000204531 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204531 [Gene_View]  ENSG00000204531 [Sequence]  chr6:31164337-31167170 [Contig_View]  POU5F1 [Vega]
ICGC DataPortalENSG00000204531
TCGA cBioPortalPOU5F1
AceView (NCBI)POU5F1
Genatlas (Paris)POU5F1
SOURCE (Princeton)POU5F1
Genetics Home Reference (NIH)POU5F1
Genomic and cartography
GoldenPath hg38 (UCSC)POU5F1  -     chr6:31164337-31167170 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POU5F1  -     6p21.33   [Description]    (hg19-Feb_2009)
GoldenPathPOU5F1 - 6p21.33 [CytoView hg19]  POU5F1 - 6p21.33 [CytoView hg38]
ImmunoBaseENSG00000204531
Genome Data Viewer NCBIPOU5F1 [Mapview hg19]  
OMIM164177   
Gene and transcription
Genbank (Entrez)AA205411 AB971680 AB971681 AI811039 AM851115
RefSeq transcript (Entrez)NM_001173531 NM_001285986 NM_001285987 NM_002701 NM_203289
Consensus coding sequences : CCDS (NCBI)POU5F1
Gene ExpressionPOU5F1 [ NCBI-GEO ]   POU5F1 [ EBI - ARRAY_EXPRESS ]   POU5F1 [ SEEK ]   POU5F1 [ MEM ]
Gene Expression Viewer (FireBrowse)POU5F1 [ Firebrowse - Broad ]
GenevisibleExpression of POU5F1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5460
GTEX Portal (Tissue expression)POU5F1
Human Protein AtlasENSG00000204531-POU5F1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POU5F1
Human Protein Atlas [tissue]ENSG00000204531-POU5F1 [tissue]
HPRD01252
Protein Interaction databases
BioGRIDPOU5F1
STRING (EMBL)POU5F1
ZODIACPOU5F1
Ontologies - Pathways
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPOU5F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:28:25 CET 2022

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