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PPAN (peter pan homolog (Drosophila))

Identity

Alias_namespeter pan (Drosophila) homolog
Alias_symbol (synonym)SSF1
SSF2
SSF
BXDC3
Other aliasSSF-1
HGNC (Hugo) PPAN
LocusID (NCBI) 56342
Atlas_Id 41789
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10106223 and ends at 10112003 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COASY (17q21.2) / PPAN (19p13.2)PPAN (19p13.2) / P2RY11 (19p13.2)PPAN (19p13.2) / SLC6A2 (16q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPAN   9227
Cards
Entrez_Gene (NCBI)PPAN  56342  peter pan homolog (Drosophila)
AliasesBXDC3; SSF; SSF-1; SSF1; 
SSF2
GeneCards (Weizmann)PPAN
Ensembl hg19 (Hinxton)ENSG00000130810 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130810 [Gene_View]  chr19:10106223-10112003 [Contig_View]  PPAN [Vega]
ICGC DataPortalENSG00000130810
TCGA cBioPortalPPAN
AceView (NCBI)PPAN
Genatlas (Paris)PPAN
WikiGenes56342
SOURCE (Princeton)PPAN
Genetics Home Reference (NIH)PPAN
Genomic and cartography
GoldenPath hg38 (UCSC)PPAN  -     chr19:10106223-10112003 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPAN  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblPPAN - 19p13.2 [CytoView hg19]  PPAN - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIPPAN [Mapview hg19]  PPAN [Mapview hg38]
OMIM607793   
Gene and transcription
Genbank (Entrez)AJ292529 AW298633 BC000535 BC009833 BC033202
RefSeq transcript (Entrez)NM_001346139 NM_001346140 NM_001346141 NM_020230
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPAN
Cluster EST : UnigeneHs.14468 [ NCBI ]
CGAP (NCI)Hs.14468
Alternative Splicing GalleryENSG00000130810
Gene ExpressionPPAN [ NCBI-GEO ]   PPAN [ EBI - ARRAY_EXPRESS ]   PPAN [ SEEK ]   PPAN [ MEM ]
Gene Expression Viewer (FireBrowse)PPAN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56342
GTEX Portal (Tissue expression)PPAN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ55
Splice isoforms : SwissVarQ9NQ55
PhosPhoSitePlusQ9NQ55
Domaine pattern : Prosite (Expaxy)BRIX (PS50833)   
Domains : Interpro (EBI)Brix   
Domain families : Pfam (Sanger)Brix (PF04427)   
Domain families : Pfam (NCBI)pfam04427   
Domain families : Smart (EMBL)Brix (SM00879)  
Conserved Domain (NCBI)PPAN
DMDM Disease mutations56342
Blocks (Seattle)PPAN
SuperfamilyQ9NQ55
Human Protein AtlasENSG00000130810
Peptide AtlasQ9NQ55
HPRD08478
IPIIPI00641364   IPI00926444   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ55
IntAct (EBI)Q9NQ55
FunCoupENSG00000130810
BioGRIDPPAN
STRING (EMBL)PPAN
ZODIACPPAN
Ontologies - Pathways
QuickGOQ9NQ55
Ontology : AmiGOribosomal large subunit assembly  RNA binding  nucleus  nucleolus  rRNA binding  preribosome, large subunit precursor  
Ontology : EGO-EBIribosomal large subunit assembly  RNA binding  nucleus  nucleolus  rRNA binding  preribosome, large subunit precursor  
NDEx NetworkPPAN
Atlas of Cancer Signalling NetworkPPAN
Wikipedia pathwaysPPAN
Orthology - Evolution
OrthoDB56342
GeneTree (enSembl)ENSG00000130810
Phylogenetic Trees/Animal Genes : TreeFamPPAN
HOVERGENQ9NQ55
HOGENOMQ9NQ55
Homologs : HomoloGenePPAN
Homology/Alignments : Family Browser (UCSC)PPAN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPAN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPAN
dbVarPPAN
ClinVarPPAN
1000_GenomesPPAN 
Exome Variant ServerPPAN
ExAC (Exome Aggregation Consortium)PPAN (select the gene name)
Genetic variants : HAPMAP56342
Genomic Variants (DGV)PPAN [DGVbeta]
DECIPHERPPAN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPAN 
Mutations
ICGC Data PortalPPAN 
TCGA Data PortalPPAN 
Broad Tumor PortalPPAN
OASIS PortalPPAN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPAN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPAN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPAN
DgiDB (Drug Gene Interaction Database)PPAN
DoCM (Curated mutations)PPAN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPAN (select a term)
intoGenPPAN
Cancer3DPPAN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607793   
Orphanet
MedgenPPAN
Genetic Testing Registry PPAN
NextProtQ9NQ55 [Medical]
TSGene56342
GENETestsPPAN
Target ValidationPPAN
Huge Navigator PPAN [HugePedia]
snp3D : Map Gene to Disease56342
BioCentury BCIQPPAN
ClinGenPPAN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56342
Chemical/Pharm GKB GenePA33551
Clinical trialPPAN
Miscellaneous
canSAR (ICR)PPAN (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPAN
EVEXPPAN
GoPubMedPPAN
iHOPPPAN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:50:27 CEST 2017

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