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PPAPDC2 (phosphatidic acid phosphatase type 2 domain containing 2)

Identity

Other aliasPDP1
PSDP
bA6J24.6
HGNC (Hugo) PPAPDC2
LocusID (NCBI) 403313
Atlas_Id 72113
Location 9p24.1  [Link to chromosome band 9p24]
Location_base_pair Starts at 4662294 and ends at 4665272 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPAPDC2   23682
Cards
Entrez_Gene (NCBI)PPAPDC2  403313  phosphatidic acid phosphatase type 2 domain containing 2
AliasesPDP1; PSDP; bA6J24.6
GeneCards (Weizmann)PPAPDC2
Ensembl hg19 (Hinxton)ENSG00000205808 [Gene_View]  chr9:4662294-4665272 [Contig_View]  PPAPDC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205808 [Gene_View]  chr9:4662294-4665272 [Contig_View]  PPAPDC2 [Vega]
ICGC DataPortalENSG00000205808
TCGA cBioPortalPPAPDC2
AceView (NCBI)PPAPDC2
Genatlas (Paris)PPAPDC2
WikiGenes403313
SOURCE (Princeton)PPAPDC2
Genetics Home Reference (NIH)PPAPDC2
Genomic and cartography
GoldenPath hg19 (UCSC)PPAPDC2  -     chr9:4662294-4665272 +  9p24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PPAPDC2  -     9p24.1   [Description]    (hg38-Dec_2013)
EnsemblPPAPDC2 - 9p24.1 [CytoView hg19]  PPAPDC2 - 9p24.1 [CytoView hg38]
Mapping of homologs : NCBIPPAPDC2 [Mapview hg19]  PPAPDC2 [Mapview hg38]
OMIM611666   
Gene and transcription
Genbank (Entrez)AK074672 AK128369 AK296773 BC036833 BC038108
RefSeq transcript (Entrez)NM_203453
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)PPAPDC2
Cluster EST : UnigeneHs.741406 [ NCBI ]
CGAP (NCI)Hs.741406
Alternative Splicing GalleryENSG00000205808
Gene ExpressionPPAPDC2 [ NCBI-GEO ]   PPAPDC2 [ EBI - ARRAY_EXPRESS ]   PPAPDC2 [ SEEK ]   PPAPDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)PPAPDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)403313
GTEX Portal (Tissue expression)PPAPDC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY26
Splice isoforms : SwissVarQ8IY26
Catalytic activity : Enzyme3.1.3.- [ Enzyme-Expasy ]   3.1.3.-3.1.3.- [ IntEnz-EBI ]   3.1.3.- [ BRENDA ]   3.1.3.- [ KEGG ]   
PhosPhoSitePlusQ8IY26
Domains : Interpro (EBI)P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)PPAPDC2
DMDM Disease mutations403313
Blocks (Seattle)PPAPDC2
SuperfamilyQ8IY26
Human Protein AtlasENSG00000205808
Peptide AtlasQ8IY26
HPRD17397
IPIIPI00647930   IPI01009854   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY26
IntAct (EBI)Q8IY26
FunCoupENSG00000205808
BioGRIDPPAPDC2
STRING (EMBL)PPAPDC2
ZODIACPPAPDC2
Ontologies - Pathways
QuickGOQ8IY26
Ontology : AmiGOmetabolic process  integral component of membrane  hydrolase activity  
Ontology : EGO-EBImetabolic process  integral component of membrane  hydrolase activity  
NDEx NetworkPPAPDC2
Atlas of Cancer Signalling NetworkPPAPDC2
Wikipedia pathwaysPPAPDC2
Orthology - Evolution
OrthoDB403313
GeneTree (enSembl)ENSG00000205808
Phylogenetic Trees/Animal Genes : TreeFamPPAPDC2
HOVERGENQ8IY26
HOGENOMQ8IY26
Homologs : HomoloGenePPAPDC2
Homology/Alignments : Family Browser (UCSC)PPAPDC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPAPDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPAPDC2
dbVarPPAPDC2
ClinVarPPAPDC2
1000_GenomesPPAPDC2 
Exome Variant ServerPPAPDC2
ExAC (Exome Aggregation Consortium)PPAPDC2 (select the gene name)
Genetic variants : HAPMAP403313
Genomic Variants (DGV)PPAPDC2 [DGVbeta]
DECIPHER (Syndromes)9:4662294-4665272  ENSG00000205808
CONAN: Copy Number AnalysisPPAPDC2 
Mutations
ICGC Data PortalPPAPDC2 
TCGA Data PortalPPAPDC2 
Broad Tumor PortalPPAPDC2
OASIS PortalPPAPDC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPAPDC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPAPDC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPAPDC2
DgiDB (Drug Gene Interaction Database)PPAPDC2
DoCM (Curated mutations)PPAPDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPAPDC2 (select a term)
intoGenPPAPDC2
Cancer3DPPAPDC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611666   
Orphanet
MedgenPPAPDC2
Genetic Testing Registry PPAPDC2
NextProtQ8IY26 [Medical]
TSGene403313
GENETestsPPAPDC2
Huge Navigator PPAPDC2 [HugePedia]
snp3D : Map Gene to Disease403313
BioCentury BCIQPPAPDC2
ClinGenPPAPDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD403313
Chemical/Pharm GKB GenePA142671155
Clinical trialPPAPDC2
Miscellaneous
canSAR (ICR)PPAPDC2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPAPDC2
EVEXPPAPDC2
GoPubMedPPAPDC2
iHOPPPAPDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:19 CET 2017

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