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PPAPDC3 (phosphatidic acid phosphatase type 2 domain containing 3)

Identity

Other aliasC9orf67
NET39
HGNC (Hugo) PPAPDC3
LocusID (NCBI) 84814
Atlas_Id 72114
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 134165081 and ends at 134184649 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPAPDC3   28174
Cards
Entrez_Gene (NCBI)PPAPDC3  84814  phosphatidic acid phosphatase type 2 domain containing 3
AliasesC9orf67; NET39
GeneCards (Weizmann)PPAPDC3
Ensembl hg19 (Hinxton)ENSG00000160539 [Gene_View]  chr9:134165081-134184649 [Contig_View]  PPAPDC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160539 [Gene_View]  chr9:134165081-134184649 [Contig_View]  PPAPDC3 [Vega]
ICGC DataPortalENSG00000160539
TCGA cBioPortalPPAPDC3
AceView (NCBI)PPAPDC3
Genatlas (Paris)PPAPDC3
WikiGenes84814
SOURCE (Princeton)PPAPDC3
Genetics Home Reference (NIH)PPAPDC3
Genomic and cartography
GoldenPath hg19 (UCSC)PPAPDC3  -     chr9:134165081-134184649 +  9q34.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PPAPDC3  -     9q34.13   [Description]    (hg38-Dec_2013)
EnsemblPPAPDC3 - 9q34.13 [CytoView hg19]  PPAPDC3 - 9q34.13 [CytoView hg38]
Mapping of homologs : NCBIPPAPDC3 [Mapview hg19]  PPAPDC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027568 AK075207 AK315502 BC006362
RefSeq transcript (Entrez)NM_032728
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367
Consensus coding sequences : CCDS (NCBI)PPAPDC3
Cluster EST : UnigeneHs.134292 [ NCBI ]
CGAP (NCI)Hs.134292
Alternative Splicing GalleryENSG00000160539
Gene ExpressionPPAPDC3 [ NCBI-GEO ]   PPAPDC3 [ EBI - ARRAY_EXPRESS ]   PPAPDC3 [ SEEK ]   PPAPDC3 [ MEM ]
Gene Expression Viewer (FireBrowse)PPAPDC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84814
GTEX Portal (Tissue expression)PPAPDC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBV4
Splice isoforms : SwissVarQ8NBV4
Catalytic activity : Enzyme3.1.3.- [ Enzyme-Expasy ]   3.1.3.-3.1.3.- [ IntEnz-EBI ]   3.1.3.- [ BRENDA ]   3.1.3.- [ KEGG ]   
PhosPhoSitePlusQ8NBV4
Domains : Interpro (EBI)P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)PPAPDC3
DMDM Disease mutations84814
Blocks (Seattle)PPAPDC3
SuperfamilyQ8NBV4
Human Protein AtlasENSG00000160539
Peptide AtlasQ8NBV4
HPRD12972
IPIIPI00168333   IPI00640438   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBV4
IntAct (EBI)Q8NBV4
FunCoupENSG00000160539
BioGRIDPPAPDC3
STRING (EMBL)PPAPDC3
ZODIACPPAPDC3
Ontologies - Pathways
QuickGOQ8NBV4
Ontology : AmiGOnuclear envelope  endoplasmic reticulum membrane  metabolic process  negative regulation of myotube differentiation  integral component of membrane  hydrolase activity  
Ontology : EGO-EBInuclear envelope  endoplasmic reticulum membrane  metabolic process  negative regulation of myotube differentiation  integral component of membrane  hydrolase activity  
NDEx NetworkPPAPDC3
Atlas of Cancer Signalling NetworkPPAPDC3
Wikipedia pathwaysPPAPDC3
Orthology - Evolution
OrthoDB84814
GeneTree (enSembl)ENSG00000160539
Phylogenetic Trees/Animal Genes : TreeFamPPAPDC3
HOVERGENQ8NBV4
HOGENOMQ8NBV4
Homologs : HomoloGenePPAPDC3
Homology/Alignments : Family Browser (UCSC)PPAPDC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPAPDC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPAPDC3
dbVarPPAPDC3
ClinVarPPAPDC3
1000_GenomesPPAPDC3 
Exome Variant ServerPPAPDC3
ExAC (Exome Aggregation Consortium)PPAPDC3 (select the gene name)
Genetic variants : HAPMAP84814
Genomic Variants (DGV)PPAPDC3 [DGVbeta]
DECIPHER (Syndromes)9:134165081-134184649  ENSG00000160539
CONAN: Copy Number AnalysisPPAPDC3 
Mutations
ICGC Data PortalPPAPDC3 
TCGA Data PortalPPAPDC3 
Broad Tumor PortalPPAPDC3
OASIS PortalPPAPDC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPAPDC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPAPDC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPAPDC3
DgiDB (Drug Gene Interaction Database)PPAPDC3
DoCM (Curated mutations)PPAPDC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPAPDC3 (select a term)
intoGenPPAPDC3
Cancer3DPPAPDC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPPAPDC3
Genetic Testing Registry PPAPDC3
NextProtQ8NBV4 [Medical]
TSGene84814
GENETestsPPAPDC3
Huge Navigator PPAPDC3 [HugePedia]
snp3D : Map Gene to Disease84814
BioCentury BCIQPPAPDC3
ClinGenPPAPDC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84814
Chemical/Pharm GKB GenePA134931886
Clinical trialPPAPDC3
Miscellaneous
canSAR (ICR)PPAPDC3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPAPDC3
EVEXPPAPDC3
GoPubMedPPAPDC3
iHOPPPAPDC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:20 CET 2017

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