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PPARGC1A (PPARG coactivator 1 alpha)

Identity

Alias (NCBI)LEM6
PGC-1(alpha)
PGC-1alpha
PGC-1v
PGC1
PGC1A
PPARGC1
HGNC (Hugo) PPARGC1A
HGNC Alias symbPGC1
PGC1A
PGC-1alpha
HGNC Alias namePPARgamma coactivator 1alpha
HGNC Previous namePPARGC1
HGNC Previous nameperoxisome proliferative activated receptor, gamma, coactivator 1
 peroxisome proliferative activated receptor, gamma, coactivator 1, alpha
 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
LocusID (NCBI) 10891
Atlas_Id 41795
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 23792021 and ends at 23890047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LRBA (4q31.3) / PPARGC1A (4p15.2)PPARGC1A (4p15.2) / NXN (17p13.3)LRBA 4q31.3 / PPARGC1A 4p15.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PPARGC1A   9237
Cards
Entrez_Gene (NCBI)PPARGC1A    PPARG coactivator 1 alpha
AliasesLEM6; PGC-1(alpha); PGC-1alpha; PGC-1v; 
PGC1; PGC1A; PPARGC1
GeneCards (Weizmann)PPARGC1A
Ensembl hg19 (Hinxton)ENSG00000109819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109819 [Gene_View]  ENSG00000109819 [Sequence]  chr4:23792021-23890047 [Contig_View]  PPARGC1A [Vega]
ICGC DataPortalENSG00000109819
TCGA cBioPortalPPARGC1A
AceView (NCBI)PPARGC1A
Genatlas (Paris)PPARGC1A
SOURCE (Princeton)PPARGC1A
Genetics Home Reference (NIH)PPARGC1A
Genomic and cartography
GoldenPath hg38 (UCSC)PPARGC1A  -     chr4:23792021-23890047 -  4p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPARGC1A  -     4p15.2   [Description]    (hg19-Feb_2009)
GoldenPathPPARGC1A - 4p15.2 [CytoView hg19]  PPARGC1A - 4p15.2 [CytoView hg38]
ImmunoBaseENSG00000109819
genome Data Viewer NCBIPPARGC1A [Mapview hg19]  
OMIM604517   
Gene and transcription
Genbank (Entrez)AB061325 AF106698 AF159714 AF186379 AK024990
RefSeq transcript (Entrez)NM_001330751 NM_001330752 NM_001330753 NM_001354825 NM_001354826 NM_001354827 NM_001354828 NM_013261
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPARGC1A
Alternative Splicing GalleryENSG00000109819
Gene ExpressionPPARGC1A [ NCBI-GEO ]   PPARGC1A [ EBI - ARRAY_EXPRESS ]   PPARGC1A [ SEEK ]   PPARGC1A [ MEM ]
Gene Expression Viewer (FireBrowse)PPARGC1A [ Firebrowse - Broad ]
GenevisibleExpression of PPARGC1A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10891
GTEX Portal (Tissue expression)PPARGC1A
Human Protein AtlasENSG00000109819-PPARGC1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PPARGC1A
Blocks (Seattle)PPARGC1A
Human Protein Atlas [tissue]ENSG00000109819-PPARGC1A [tissue]
HPRD05155
IPIIPI00033138   IPI00963964   IPI00965951   IPI00964571   
Protein Interaction databases
BioGRIDPPARGC1A
STRING (EMBL)PPARGC1A
ZODIACPPARGC1A
Ontologies - Pathways
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPPARGC1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:40:25 CET 2021
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