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PPCDC (phosphopantothenoylcysteine decarboxylase)

Identity

Alias_symbol (synonym)MDS018
FLJ14585
Other aliasPPC-DC
coaC
HGNC (Hugo) PPCDC
LocusID (NCBI) 60490
Atlas_Id 72117
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 75315896 and ends at 75343067 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PPCDC (15q24.2) / SCAMP2 (15q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPCDC   28107
Cards
Entrez_Gene (NCBI)PPCDC  60490  phosphopantothenoylcysteine decarboxylase
AliasesMDS018; PPC-DC; coaC
GeneCards (Weizmann)PPCDC
Ensembl hg19 (Hinxton)ENSG00000138621 [Gene_View]  chr15:75315896-75343067 [Contig_View]  PPCDC [Vega]
Ensembl hg38 (Hinxton)ENSG00000138621 [Gene_View]  chr15:75315896-75343067 [Contig_View]  PPCDC [Vega]
ICGC DataPortalENSG00000138621
TCGA cBioPortalPPCDC
AceView (NCBI)PPCDC
Genatlas (Paris)PPCDC
WikiGenes60490
SOURCE (Princeton)PPCDC
Genetics Home Reference (NIH)PPCDC
Genomic and cartography
GoldenPath hg19 (UCSC)PPCDC  -     chr15:75315896-75343067 +  15q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PPCDC  -     15q24.2   [Description]    (hg38-Dec_2013)
EnsemblPPCDC - 15q24.2 [CytoView hg19]  PPCDC - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBIPPCDC [Mapview hg19]  PPCDC [Mapview hg38]
OMIM609854   
Gene and transcription
Genbank (Entrez)AF182419 AK027491 AY358848 BC005877 BC014409
RefSeq transcript (Entrez)NM_001301101 NM_001301102 NM_001301103 NM_001301104 NM_001301105 NM_021823
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)PPCDC
Cluster EST : UnigeneHs.458922 [ NCBI ]
CGAP (NCI)Hs.458922
Alternative Splicing GalleryENSG00000138621
Gene ExpressionPPCDC [ NCBI-GEO ]   PPCDC [ EBI - ARRAY_EXPRESS ]   PPCDC [ SEEK ]   PPCDC [ MEM ]
Gene Expression Viewer (FireBrowse)PPCDC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60490
GTEX Portal (Tissue expression)PPCDC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CD2
Splice isoforms : SwissVarQ96CD2
Catalytic activity : Enzyme4.1.1.36 [ Enzyme-Expasy ]   4.1.1.364.1.1.36 [ IntEnz-EBI ]   4.1.1.36 [ BRENDA ]   4.1.1.36 [ KEGG ]   
PhosPhoSitePlusQ96CD2
Domains : Interpro (EBI)Flavoprotein   
Domain families : Pfam (Sanger)Flavoprotein (PF02441)   
Domain families : Pfam (NCBI)pfam02441   
Conserved Domain (NCBI)PPCDC
DMDM Disease mutations60490
Blocks (Seattle)PPCDC
PDB (SRS)1QZU   
PDB (PDBSum)1QZU   
PDB (IMB)1QZU   
PDB (RSDB)1QZU   
Structural Biology KnowledgeBase1QZU   
SCOP (Structural Classification of Proteins)1QZU   
CATH (Classification of proteins structures)1QZU   
SuperfamilyQ96CD2
Human Protein AtlasENSG00000138621
Peptide AtlasQ96CD2
HPRD14377
IPIIPI00303962   IPI00604702   
Protein Interaction databases
DIP (DOE-UCLA)Q96CD2
IntAct (EBI)Q96CD2
FunCoupENSG00000138621
BioGRIDPPCDC
STRING (EMBL)PPCDC
ZODIACPPCDC
Ontologies - Pathways
QuickGOQ96CD2
Ontology : AmiGOphosphopantothenoylcysteine decarboxylase activity  phosphopantothenoylcysteine decarboxylase activity  protein binding  cytosol  vitamin metabolic process  water-soluble vitamin metabolic process  coenzyme biosynthetic process  coenzyme A biosynthetic process  coenzyme A biosynthetic process  pantothenate metabolic process  small molecule metabolic process  
Ontology : EGO-EBIphosphopantothenoylcysteine decarboxylase activity  phosphopantothenoylcysteine decarboxylase activity  protein binding  cytosol  vitamin metabolic process  water-soluble vitamin metabolic process  coenzyme biosynthetic process  coenzyme A biosynthetic process  coenzyme A biosynthetic process  pantothenate metabolic process  small molecule metabolic process  
Pathways : KEGGPantothenate and CoA biosynthesis   
NDEx NetworkPPCDC
Atlas of Cancer Signalling NetworkPPCDC
Wikipedia pathwaysPPCDC
Orthology - Evolution
OrthoDB60490
GeneTree (enSembl)ENSG00000138621
Phylogenetic Trees/Animal Genes : TreeFamPPCDC
HOVERGENQ96CD2
HOGENOMQ96CD2
Homologs : HomoloGenePPCDC
Homology/Alignments : Family Browser (UCSC)PPCDC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPCDC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPCDC
dbVarPPCDC
ClinVarPPCDC
1000_GenomesPPCDC 
Exome Variant ServerPPCDC
ExAC (Exome Aggregation Consortium)PPCDC (select the gene name)
Genetic variants : HAPMAP60490
Genomic Variants (DGV)PPCDC [DGVbeta]
DECIPHER (Syndromes)15:75315896-75343067  ENSG00000138621
CONAN: Copy Number AnalysisPPCDC 
Mutations
ICGC Data PortalPPCDC 
TCGA Data PortalPPCDC 
Broad Tumor PortalPPCDC
OASIS PortalPPCDC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPCDC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPCDC
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch PPCDC
DgiDB (Drug Gene Interaction Database)PPCDC
DoCM (Curated mutations)PPCDC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPCDC (select a term)
intoGenPPCDC
Cancer3DPPCDC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609854   
Orphanet
MedgenPPCDC
Genetic Testing Registry PPCDC
NextProtQ96CD2 [Medical]
TSGene60490
GENETestsPPCDC
Huge Navigator PPCDC [HugePedia]
snp3D : Map Gene to Disease60490
BioCentury BCIQPPCDC
ClinGenPPCDC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60490
Chemical/Pharm GKB GenePA142671157
Clinical trialPPCDC
Miscellaneous
canSAR (ICR)PPCDC (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPCDC
EVEXPPCDC
GoPubMedPPCDC
iHOPPPCDC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:39:20 CET 2017

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