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PPDPF (pancreatic progenitor cell differentiation and proliferation factor)

Identity

Alias_namesC20orf149
chromosome 20 open reading frame 149
pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)
Alias_symbol (synonym)dJ697K14.9
exdpf
Other alias
HGNC (Hugo) PPDPF
LocusID (NCBI) 79144
Atlas_Id 56301
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63520780 and ends at 63522171 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EIF4A2 (3q27.3) / PPDPF (20q13.33)PPDPF (20q13.33) / CHD3 (17p13.1)PPDPF (20q13.33) / CHST11 (12q23.3)
PPDPF (20q13.33) / HNRNPD (4q21.22)PPDPF (20q13.33) / MYO1D (17q11.2)PPDPF (20q13.33) / NEAT1 (11q13.1)
PPDPF (20q13.33) / PPDPF (20q13.33)PPDPF (20q13.33) / SARS (1p13.3)PPDPF (20q13.33) / TMED7-TICAM2 (5q22.3)
PPDPF (20q13.33) / UBAP2L (1q21.3)SMARCA4 (19p13.2) / PPDPF (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPDPF   16142
Cards
Entrez_Gene (NCBI)PPDPF  79144  pancreatic progenitor cell differentiation and proliferation factor
AliasesC20orf149; dJ697K14.9; exdpf
GeneCards (Weizmann)PPDPF
Ensembl hg19 (Hinxton)ENSG00000125534 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125534 [Gene_View]  chr20:63520780-63522171 [Contig_View]  PPDPF [Vega]
ICGC DataPortalENSG00000125534
TCGA cBioPortalPPDPF
AceView (NCBI)PPDPF
Genatlas (Paris)PPDPF
WikiGenes79144
SOURCE (Princeton)PPDPF
Genetics Home Reference (NIH)PPDPF
Genomic and cartography
GoldenPath hg38 (UCSC)PPDPF  -     chr20:63520780-63522171 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPDPF  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblPPDPF - 20q13.33 [CytoView hg19]  PPDPF - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIPPDPF [Mapview hg19]  PPDPF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024699 AK311318 BC002531 BC056416
RefSeq transcript (Entrez)NM_024299
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPDPF
Cluster EST : UnigeneHs.79625 [ NCBI ]
CGAP (NCI)Hs.79625
Alternative Splicing GalleryENSG00000125534
Gene ExpressionPPDPF [ NCBI-GEO ]   PPDPF [ EBI - ARRAY_EXPRESS ]   PPDPF [ SEEK ]   PPDPF [ MEM ]
Gene Expression Viewer (FireBrowse)PPDPF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79144
GTEX Portal (Tissue expression)PPDPF
Human Protein AtlasENSG00000125534-PPDPF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3Y8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3Y8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3Y8
Splice isoforms : SwissVarQ9H3Y8
PhosPhoSitePlusQ9H3Y8
Domains : Interpro (EBI)PPDPF   
Domain families : Pfam (Sanger)PPDFL (PF15060)   
Domain families : Pfam (NCBI)pfam15060   
Conserved Domain (NCBI)PPDPF
DMDM Disease mutations79144
Blocks (Seattle)PPDPF
SuperfamilyQ9H3Y8
Human Protein Atlas [tissue]ENSG00000125534-PPDPF [tissue]
Peptide AtlasQ9H3Y8
HPRD12750
IPIIPI00013278   IPI00218175   IPI00607900   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3Y8
IntAct (EBI)Q9H3Y8
FunCoupENSG00000125534
BioGRIDPPDPF
STRING (EMBL)PPDPF
ZODIACPPDPF
Ontologies - Pathways
QuickGOQ9H3Y8
Ontology : AmiGOmulticellular organism development  cell differentiation  
Ontology : EGO-EBImulticellular organism development  cell differentiation  
NDEx NetworkPPDPF
Atlas of Cancer Signalling NetworkPPDPF
Wikipedia pathwaysPPDPF
Orthology - Evolution
OrthoDB79144
GeneTree (enSembl)ENSG00000125534
Phylogenetic Trees/Animal Genes : TreeFamPPDPF
HOVERGENQ9H3Y8
HOGENOMQ9H3Y8
Homologs : HomoloGenePPDPF
Homology/Alignments : Family Browser (UCSC)PPDPF
Gene fusions - Rearrangements
Tumor Fusion PortalPPDPF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPDPF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPDPF
dbVarPPDPF
ClinVarPPDPF
1000_GenomesPPDPF 
Exome Variant ServerPPDPF
ExAC (Exome Aggregation Consortium)ENSG00000125534
GNOMAD BrowserENSG00000125534
Genetic variants : HAPMAP79144
Genomic Variants (DGV)PPDPF [DGVbeta]
DECIPHERPPDPF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPDPF 
Mutations
ICGC Data PortalPPDPF 
TCGA Data PortalPPDPF 
Broad Tumor PortalPPDPF
OASIS PortalPPDPF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPDPF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPDPF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPDPF
DgiDB (Drug Gene Interaction Database)PPDPF
DoCM (Curated mutations)PPDPF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPDPF (select a term)
intoGenPPDPF
Cancer3DPPDPF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPPDPF
MedgenPPDPF
Genetic Testing Registry PPDPF
NextProtQ9H3Y8 [Medical]
TSGene79144
GENETestsPPDPF
Target ValidationPPDPF
Huge Navigator PPDPF [HugePedia]
snp3D : Map Gene to Disease79144
BioCentury BCIQPPDPF
ClinGenPPDPF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79144
Chemical/Pharm GKB GenePA25691
Clinical trialPPDPF
Miscellaneous
canSAR (ICR)PPDPF (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPDPF
EVEXPPDPF
GoPubMedPPDPF
iHOPPPDPF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:29:45 CET 2017

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