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PPEF1-AS1 (PPEF1 antisense RNA 1)

Identity

Alias_namesPPEF1 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) PPEF1-AS1
LocusID (NCBI) 100874004
Atlas_Id 72119
Location Xp22.13  [Link to chromosome band Xp22]
Location_base_pair Starts at 18688644 and ends at 18692687 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPEF1-AS1   40463
Cards
Entrez_Gene (NCBI)PPEF1-AS1  100874004  PPEF1 antisense RNA 1
Aliases
GeneCards (Weizmann)PPEF1-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:18688644-18692687 [Contig_View]  PPEF1-AS1 [Vega]
TCGA cBioPortalPPEF1-AS1
AceView (NCBI)PPEF1-AS1
Genatlas (Paris)PPEF1-AS1
WikiGenes100874004
SOURCE (Princeton)PPEF1-AS1
Genetics Home Reference (NIH)PPEF1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PPEF1-AS1  -     chrX:18688644-18692687 -  Xp22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPEF1-AS1  -     Xp22.13   [Description]    (hg19-Feb_2009)
EnsemblPPEF1-AS1 - Xp22.13 [CytoView hg19]  PPEF1-AS1 - Xp22.13 [CytoView hg38]
Mapping of homologs : NCBIPPEF1-AS1 [Mapview hg19]  PPEF1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM683329 BM929366
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPEF1-AS1
Gene ExpressionPPEF1-AS1 [ NCBI-GEO ]   PPEF1-AS1 [ EBI - ARRAY_EXPRESS ]   PPEF1-AS1 [ SEEK ]   PPEF1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PPEF1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874004
GTEX Portal (Tissue expression)PPEF1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PPEF1-AS1
DMDM Disease mutations100874004
Blocks (Seattle)PPEF1-AS1
Protein Interaction databases
BioGRIDPPEF1-AS1
STRING (EMBL)PPEF1-AS1
ZODIACPPEF1-AS1
Ontologies - Pathways
Huge Navigator PPEF1-AS1 [HugePedia]
snp3D : Map Gene to Disease100874004
BioCentury BCIQPPEF1-AS1
ClinGenPPEF1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874004
Clinical trialPPEF1-AS1
Miscellaneous
canSAR (ICR)PPEF1-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPEF1-AS1
EVEXPPEF1-AS1
GoPubMedPPEF1-AS1
iHOPPPEF1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:00:25 CET 2017

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