Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PPEF1 (protein phosphatase, EF-hand calcium binding domain 1)

Identity

Other namesPP7
PPEF
PPP7C
HGNC PPEF1
Location Xp22
Location_base_pair Starts at 18618966 and ends at 18755955 bp from pter ( according to hg18-March_2006).
Note

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNCPPEF1   9243
Entrez_GenePPEF1  5475  protein phosphatase, EF-hand calcium binding domain 1
Cards
GeneCardsPPEF1
EnsemblPPEF1 [Search_View]   ENSG00000086717 [Gene_View]
GenatlasPPEF1
GeneLynxPPEF1
eGenomePPEF1
euGene5475
Genomic and cartography
GoldenPathPPEF1  -  Xp22   chrX:18618966-18755955 +  Xp22.13   [Description]    (hg18-March_2006)
EnsemblPPEF1 - Xp22.13 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGenePPEF1
Gene and transcription
GenbankAF023455 [ ENTREZ ]
GenbankAF027977 [ ENTREZ ]
GenbankAK290463 [ ENTREZ ]
GenbankAK292235 [ ENTREZ ]
GenbankAK315809 [ ENTREZ ]
RefSeqNM_006240 [ SRS ]    NM_006240 [ ENTREZ ]
RefSeqNM_152224 [ SRS ]    NM_152224 [ ENTREZ ]
RefSeqNM_152226 [ SRS ]    NM_152226 [ ENTREZ ]
RefSeqAC_000066 [ SRS ]    AC_000066 [ ENTREZ ]
RefSeqAC_000155 [ SRS ]    AC_000155 [ ENTREZ ]
RefSeqNC_000023 [ SRS ]    NC_000023 [ ENTREZ ]
RefSeqNT_011757 [ SRS ]    NT_011757 [ ENTREZ ]
RefSeqNW_001842360 [ SRS ]    NW_001842360 [ ENTREZ ]
RefSeqNW_927700 [ SRS ]    NW_927700 [ ENTREZ ]
AceViewPPEF1 AceView - NCBI
UnigeneHs.211589 [ SRS ]    Hs.211589 [ NCBI ]     HS211589 [ spliceNest ]
Fast-db2880 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO14829 [ SRS]    O14829 [ EXPASY ]     O14829 [ INTERPRO ]     O14829 [ UNIPROT ]
PrositePS00018 EF_HAND_1 [ SRS ]    PS00018 EF_HAND_1 [ Expasy ]
PrositePS50222 EF_HAND_2 [ SRS ]    PS50222 EF_HAND_2 [ Expasy ]
PrositePS50096 IQ [ SRS ]    PS50096 IQ [ Expasy ]
PrositePS00125 SER_THR_PHOSPHATASE [ SRS ]    PS00125 SER_THR_PHOSPHATASE [ Expasy ]
InterproIPR011992 EF-Hand_type [ SRS ]    IPR011992 EF-Hand_type [ EBI ]
InterproIPR002048 EF_hand_Ca_bd [ SRS ]    IPR002048 EF_hand_Ca_bd [ EBI ]
InterproIPR000048 IQ_CaM_bd_region [ SRS ]    IPR000048 IQ_CaM_bd_region [ EBI ]
InterproIPR004843 M-pesterase [ SRS ]    IPR004843 M-pesterase [ EBI ]
InterproIPR012008 PPEF [ SRS ]    IPR012008 PPEF [ EBI ]
InterproIPR013235 PPP5 [ SRS ]    IPR013235 PPP5 [ EBI ]
InterproIPR006186 T_phtase_apaH [ SRS ]    IPR006186 T_phtase_apaH [ EBI ]
CluSTrO14829
PfamPF00036 efhand [ SRS ]    PF00036 efhand [ Sanger ]    pfam00036 [ NCBI-CDD ]
PfamPF00612 IQ [ SRS ]    PF00612 IQ [ Sanger ]    pfam00612 [ NCBI-CDD ]
PfamPF00149 Metallophos [ SRS ]    PF00149 Metallophos [ Sanger ]    pfam00149 [ NCBI-CDD ]
PfamPF08321 PPP5 [ SRS ]    PF08321 PPP5 [ Sanger ]    pfam08321 [ NCBI-CDD ]
SmartSM00054 EFh [EMBL]
SmartSM00015 IQ [EMBL]
SmartSM00156 PP2Ac [EMBL]
ProdomPD000012 EF-hand[INRA-Toulouse]
ProdomO14829 PPE1_HUMAN [ Domain structure ]   O14829 PPE1_HUMAN  [ sequences sharing at least 1 domain ]
ProdomPD000012[INRA-Toulouse]
ProdomO14829 PPE1_HUMAN [ Domain structure ]   O14829 PPE1_HUMAN  [ sequences sharing at least 1 domain ]
BlocksO14829
HPRD02118
Protein Interaction databases
DIPO14829
IntActO14829
Polymorphism : SNP, mutations, diseases
OMIM300109    [ map ]   
GENECLINICS300109
SNPPPEF1 [dbSNP-NCBI]  
SNPNM_006240 [SNP-NCI]  
SNPNM_152224 [SNP-NCI]  
SNPNM_152226 [SNP-NCI]  
SNPPPEF1 [GeneSNPs - Utah]  PPEF1] [HGBASE - SRS]
HAPMAPPPEF1 [HAPMAP]  
COSMICPPEF1 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDPPEF1
General knowledge
Family BrowserPPEF1 [UCSC Family Browser]
SOURCENM_006240
SOURCENM_152224
SOURCENM_152226
SMDHs.211589
SAGEHs.211589
Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.16 [ Enzyme-SRS ]   3.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   3.1.3.16 [ WIT ]
GOmagnesium ion binding [Amigo]  magnesium ion binding
GOprotein serine/threonine phosphatase activity [Amigo]  protein serine/threonine phosphatase activity
GOiron ion binding [Amigo]  iron ion binding
GOcalcium ion binding [Amigo]  calcium ion binding
GOprotein amino acid dephosphorylation [Amigo]  protein amino acid dephosphorylation
GOhydrolase activity [Amigo]  hydrolase activity
GOmanganese ion binding [Amigo]  manganese ion binding
GOdetection of stimulus involved in sensory perception [Amigo]  detection of stimulus involved in sensory perception
PubGenePPEF1
TreeFamPPEF1
CTD5475 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbePPEF1 Related clones (RZPD - Berlin)
PubMed
PubMed12 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2008Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Oct 14 20:48:47 2008


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