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PPFIA2 (protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2)

Identity

Other names-
HGNC (Hugo) PPFIA2
LocusID (NCBI) 8499
Location 12q21.31
Location_base_pair Starts at 81652045 and ends at 82152474 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PPFIA2   9246
Entrez_Gene (NCBI)PPFIA2  8499  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
Cards
GeneCards (Weizmann)PPFIA2
Ensembl (Hinxton)ENSG00000139220 [Gene_View]  chr12:81652045-82152474 [Contig_View]  PPFIA2 [Vega]
AceView (NCBI)PPFIA2
Genatlas (Paris)PPFIA2
SOURCE (Stanford)NM_001220473 NM_001220474 NM_001220475 NM_001220476 NM_001220477 NM_001220478 NM_001220479 NM_001220480 NM_003625
Genomic and cartography
GoldenPath (UCSC)PPFIA2  -  12q21.31   chr12:81652045-82152474 -  12q21.31   [Description]    (hg19-Feb_2009)
EnsemblPPFIA2 - 12q21.31 [CytoView]
Mapping of homologs : NCBIPPFIA2 [Mapview]
OMIM603143   
Gene and transcription
Genbank (Entrez)AB210009 AF034799 AK123372 AK126971 AK294505
RefSeq transcript (SRS)NM_001220473 NM_001220474 NM_001220475 NM_001220476 NM_001220477 NM_001220478 NM_001220479 NM_001220480 NM_003625
RefSeq transcript (Entrez)NM_001220473 NM_001220474 NM_001220475 NM_001220476 NM_001220477 NM_001220478 NM_001220479 NM_001220480 NM_003625
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
Consensus coding sequences : CCDS (NCBI)PPFIA2
Cluster EST : UnigeneHs.737103 [ SRS ] Hs.737103 [ NCBI ]
CGAP (NCI)Hs.737103
Alternative Splicing : Fast-db (Paris)GSHG0007654
Alternative Splicing GalleryENSG00000139220
Gene ExpressionPPFIA2 [ NCBI-GEO ]   PPFIA2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75334 (SRS) O75334 (Uniprot)
NextProtO75334
With graphics : InterProO75334
Splice isoforms : SwissVarO75334(Swissvar)
Domaine pattern : Prosite (SRS)SAM_DOMAIN (PS50105)   
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (SRS)SAM    SAM/pointed    SAM_2    SAM_type1   
Domains : Interpro (EBI)SAM    SAM/pointed    SAM_2    SAM_type1   
Related proteins : CluSTrO75334
Domain families : Pfam (SRS)SAM_1 (PF00536)    SAM_2 (PF07647)   
Domain families : Pfam (Sanger)SAM_1 (PF00536)    SAM_2 (PF07647)   
Domain families : Pfam (NCBI)pfam00536    pfam07647   
Domain families : Smart (EMBL)SAM (SM00454)  
DMDM8499
Blocks (Seattle)O75334
PDB (SRS)3TAC    3TAD   
PDB (PDBSum)3TAC    3TAD   
PDB (IMB)3TAC    3TAD   
PDB (RSDB)3TAC    3TAD   
Human Protein AtlasENSG00000139220
HPRD04392
IPIIPI00289271   IPI01011450   IPI01015892   IPI00922534   IPI00942213   IPI00795341   IPI01021771   IPI01022586   IPI01022752   IPI01020968   IPI01021120   IPI01021931   IPI01022091   IPI01022911   IPI01023069   IPI01022352   IPI01021282   IPI01021957   IPI01022110   IPI01014624   IPI01020821   
Protein Interaction databases
DIP (DOE-UCLA)O75334
IntAct (EBI)O75334
FunCoupENSG00000139220
REACTOMEPPFIA2
Protein Interaction Database8499
BioGRIDPPFIA2
InParanoidO75334
Interologous Interaction database O75334
IntegromeDBPPFIA2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PPFIA2
SNP (GeneSNP Utah)PPFIA2
SNP : HGBasePPFIA2
Genetic variants : HAPMAPPPFIA2
Somatic Mutations in Cancer : COSMICPPFIA2 
CONAN: Copy Number AnalysisPPFIA2 
Mutations and Diseases : HGMDPPFIA2
OMIM603143   
GENETests603143   
Disease Genetic AssociationPPFIA2
Huge Navigator PPFIA2 [HugePedia]  PPFIA2 [HugeCancerGEM]
Genomic VariantsPPFIA2  PPFIA2 [DGVbeta]
snp3D : Map Gene to Disease8499
General knowledge
Homologs : HomoloGenePPFIA2
Homology/Alignments : Family Browser (UCSC)PPFIA2
Phylogenetic Trees/Animal Genes : TreeFamPPFIA2
Chemical/Protein Interactions : CTD8499
Chemical/Pharm GKB GenePA33567
Clinical trialPPFIA2
Cancer Resource (Charite)ENSG00000139220
Ontology : AmiGOprotein binding  cytoplasm  cell-matrix adhesion  cell surface  
Ontology : EGO-EBIprotein binding  cytoplasm  cell-matrix adhesion  cell surface  
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGenePPFIA2
iHOPPPFIA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:18:40 CEST 2013
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