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PPIAL4A (peptidylprolyl isomerase A like 4A)

Identity

Alias_namesPPIAL4
PPIAL4B
peptidylprolyl isomerase A (cyclophilin A)-like 4
peptidylprolyl isomerase A (cyclophilin A)-like 4B
Alias_symbol (synonym)COAS2
Other aliasCOAS-2
HGNC (Hugo) PPIAL4A
LocusID (NCBI) 653505
Atlas_Id 72122
Location 1p11.2  [Link to chromosome band 1p11]
Location_base_pair Starts at 120889746 and ends at 120890530 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPIAL4A   24369
Cards
Entrez_Gene (NCBI)PPIAL4A  653505  peptidylprolyl isomerase A like 4A
AliasesCOAS-2; COAS2; PPIAL4; PPIAL4B
GeneCards (Weizmann)PPIAL4A
Ensembl hg19 (Hinxton)ENSG00000263353 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000263353 [Gene_View]  chr1:120889746-120890530 [Contig_View]  PPIAL4A [Vega]
ICGC DataPortalENSG00000263353
TCGA cBioPortalPPIAL4A
AceView (NCBI)PPIAL4A
Genatlas (Paris)PPIAL4A
WikiGenes653505
SOURCE (Princeton)PPIAL4A
Genetics Home Reference (NIH)PPIAL4A
Genomic and cartography
GoldenPath hg38 (UCSC)PPIAL4A  -     chr1:120889746-120890530 +  1p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPIAL4A  -     1p11.2   [Description]    (hg19-Feb_2009)
EnsemblPPIAL4A - 1p11.2 [CytoView hg19]  PPIAL4A - 1p11.2 [CytoView hg38]
Mapping of homologs : NCBIPPIAL4A [Mapview hg19]  PPIAL4A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB084917 BC172332
RefSeq transcript (Entrez)NM_001143883
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPIAL4A
Cluster EST : UnigeneHs.631792 [ NCBI ]
CGAP (NCI)Hs.631792
Alternative Splicing GalleryENSG00000263353
Gene ExpressionPPIAL4A [ NCBI-GEO ]   PPIAL4A [ EBI - ARRAY_EXPRESS ]   PPIAL4A [ SEEK ]   PPIAL4A [ MEM ]
Gene Expression Viewer (FireBrowse)PPIAL4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653505
GTEX Portal (Tissue expression)PPIAL4A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y536   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y536  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y536
Splice isoforms : SwissVarQ9Y536
Catalytic activity : Enzyme5.2.1.8 [ Enzyme-Expasy ]   5.2.1.85.2.1.8 [ IntEnz-EBI ]   5.2.1.8 [ BRENDA ]   5.2.1.8 [ KEGG ]   
PhosPhoSitePlusQ9Y536
Domaine pattern : Prosite (Expaxy)CSA_PPIASE_1 (PS00170)    CSA_PPIASE_2 (PS50072)   
Domains : Interpro (EBI)Cyclophilin-like_dom    Cyclophilin-type_PPIase    Cyclophilin-type_PPIase_CS    Cyclophilin-type_PPIase_dom   
Domain families : Pfam (Sanger)Pro_isomerase (PF00160)   
Domain families : Pfam (NCBI)pfam00160   
Conserved Domain (NCBI)PPIAL4A
DMDM Disease mutations653505
Blocks (Seattle)PPIAL4A
SuperfamilyQ9Y536
Human Protein AtlasENSG00000263353
Peptide AtlasQ9Y536
Protein Interaction databases
DIP (DOE-UCLA)Q9Y536
IntAct (EBI)Q9Y536
FunCoupENSG00000263353
BioGRIDPPIAL4A
STRING (EMBL)PPIAL4A
ZODIACPPIAL4A
Ontologies - Pathways
QuickGOQ9Y536
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  cytoplasm  protein folding  extracellular exosome  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  cytoplasm  protein folding  extracellular exosome  
NDEx NetworkPPIAL4A
Atlas of Cancer Signalling NetworkPPIAL4A
Wikipedia pathwaysPPIAL4A
Orthology - Evolution
OrthoDB653505
GeneTree (enSembl)ENSG00000263353
Phylogenetic Trees/Animal Genes : TreeFamPPIAL4A
HOVERGENQ9Y536
HOGENOMQ9Y536
Homologs : HomoloGenePPIAL4A
Homology/Alignments : Family Browser (UCSC)PPIAL4A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPIAL4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPIAL4A
dbVarPPIAL4A
ClinVarPPIAL4A
1000_GenomesPPIAL4A 
Exome Variant ServerPPIAL4A
ExAC (Exome Aggregation Consortium)PPIAL4A (select the gene name)
Genetic variants : HAPMAP653505
Genomic Variants (DGV)PPIAL4A [DGVbeta]
DECIPHERPPIAL4A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPIAL4A 
Mutations
ICGC Data PortalPPIAL4A 
TCGA Data PortalPPIAL4A 
Broad Tumor PortalPPIAL4A
OASIS PortalPPIAL4A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPIAL4A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPIAL4A
DgiDB (Drug Gene Interaction Database)PPIAL4A
DoCM (Curated mutations)PPIAL4A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPIAL4A (select a term)
intoGenPPIAL4A
Cancer3DPPIAL4A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPPIAL4A
Genetic Testing Registry PPIAL4A
NextProtQ9Y536 [Medical]
TSGene653505
GENETestsPPIAL4A
Target ValidationPPIAL4A
Huge Navigator PPIAL4A [HugePedia]
snp3D : Map Gene to Disease653505
BioCentury BCIQPPIAL4A
ClinGenPPIAL4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653505
Chemical/Pharm GKB GenePA164724910
Clinical trialPPIAL4A
Miscellaneous
canSAR (ICR)PPIAL4A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPIAL4A
EVEXPPIAL4A
GoPubMedPPIAL4A
iHOPPPIAL4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:03 CEST 2017

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