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PPIAL4C (peptidylprolyl isomerase A like 4C)

Identity

Other aliasCOAS-2
HGNC (Hugo) PPIAL4C
LocusID (NCBI) 653598
Atlas_Id 72123
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149583823 and ends at 149584607 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPIAL4C   33995
Cards
Entrez_Gene (NCBI)PPIAL4C  653598  peptidylprolyl isomerase A like 4C
AliasesCOAS-2
GeneCards (Weizmann)PPIAL4C
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:149583823-149584607 [Contig_View]  PPIAL4C [Vega]
TCGA cBioPortalPPIAL4C
AceView (NCBI)PPIAL4C
Genatlas (Paris)PPIAL4C
WikiGenes653598
SOURCE (Princeton)PPIAL4C
Genetics Home Reference (NIH)PPIAL4C
Genomic and cartography
GoldenPath hg38 (UCSC)PPIAL4C  -     chr1:149583823-149584607 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPIAL4C  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblPPIAL4C - 1q21.2 [CytoView hg19]  PPIAL4C - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIPPIAL4C [Mapview hg19]  PPIAL4C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123006 BC130376 BC130378
RefSeq transcript (Entrez)NM_001135789
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPIAL4C
Cluster EST : UnigeneHs.534674 [ NCBI ]
CGAP (NCI)Hs.534674
Gene ExpressionPPIAL4C [ NCBI-GEO ]   PPIAL4C [ EBI - ARRAY_EXPRESS ]   PPIAL4C [ SEEK ]   PPIAL4C [ MEM ]
Gene Expression Viewer (FireBrowse)PPIAL4C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653598
GTEX Portal (Tissue expression)PPIAL4C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A0B4J2A2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A0B4J2A2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A0B4J2A2
Splice isoforms : SwissVarA0A0B4J2A2
PhosPhoSitePlusA0A0B4J2A2
Domaine pattern : Prosite (Expaxy)CSA_PPIASE_1 (PS00170)    CSA_PPIASE_2 (PS50072)   
Domains : Interpro (EBI)Cyclophilin-like_dom    Cyclophilin-type_PPIase    Cyclophilin-type_PPIase_CS    Cyclophilin-type_PPIase_dom   
Domain families : Pfam (Sanger)Pro_isomerase (PF00160)   
Domain families : Pfam (NCBI)pfam00160   
Conserved Domain (NCBI)PPIAL4C
DMDM Disease mutations653598
Blocks (Seattle)PPIAL4C
SuperfamilyA0A0B4J2A2
Peptide AtlasA0A0B4J2A2
Protein Interaction databases
DIP (DOE-UCLA)A0A0B4J2A2
IntAct (EBI)A0A0B4J2A2
BioGRIDPPIAL4C
STRING (EMBL)PPIAL4C
ZODIACPPIAL4C
Ontologies - Pathways
QuickGOA0A0B4J2A2
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  cytoplasm  protein folding  extracellular exosome  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  cytoplasm  protein folding  extracellular exosome  
NDEx NetworkPPIAL4C
Atlas of Cancer Signalling NetworkPPIAL4C
Wikipedia pathwaysPPIAL4C
Orthology - Evolution
OrthoDB653598
Phylogenetic Trees/Animal Genes : TreeFamPPIAL4C
HOVERGENA0A0B4J2A2
HOGENOMA0A0B4J2A2
Homologs : HomoloGenePPIAL4C
Homology/Alignments : Family Browser (UCSC)PPIAL4C
Gene fusions - Rearrangements
Fusion: Tumor Portal PPIAL4C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPIAL4C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPIAL4C
dbVarPPIAL4C
ClinVarPPIAL4C
1000_GenomesPPIAL4C 
Exome Variant ServerPPIAL4C
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP653598
Genomic Variants (DGV)PPIAL4C [DGVbeta]
DECIPHERPPIAL4C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPIAL4C 
Mutations
ICGC Data PortalPPIAL4C 
TCGA Data PortalPPIAL4C 
Broad Tumor PortalPPIAL4C
OASIS PortalPPIAL4C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPIAL4C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPIAL4C
DgiDB (Drug Gene Interaction Database)PPIAL4C
DoCM (Curated mutations)PPIAL4C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPIAL4C (select a term)
intoGenPPIAL4C
Cancer3DPPIAL4C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPPIAL4C
Genetic Testing Registry PPIAL4C
NextProtA0A0B4J2A2 [Medical]
TSGene653598
GENETestsPPIAL4C
Target ValidationPPIAL4C
Huge Navigator PPIAL4C [HugePedia]
snp3D : Map Gene to Disease653598
BioCentury BCIQPPIAL4C
ClinGenPPIAL4C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653598
Chemical/Pharm GKB GenePA164724917
Clinical trialPPIAL4C
Miscellaneous
canSAR (ICR)PPIAL4C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPIAL4C
EVEXPPIAL4C
GoPubMedPPIAL4C
iHOPPPIAL4C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:23:15 CET 2017

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