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PPIAL4D (peptidylprolyl isomerase A like 4D)

Identity

Other alias-
HGNC (Hugo) PPIAL4D
LocusID (NCBI) 645142
Atlas_Id 72124
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 144372875 and ends at 144373659 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPIAL4D   33998
Cards
Entrez_Gene (NCBI)PPIAL4D  645142  peptidylprolyl isomerase A like 4D
Aliases
GeneCards (Weizmann)PPIAL4D
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:144372875-144373659 [Contig_View]  PPIAL4D [Vega]
TCGA cBioPortalPPIAL4D
AceView (NCBI)PPIAL4D
Genatlas (Paris)PPIAL4D
WikiGenes645142
SOURCE (Princeton)PPIAL4D
Genetics Home Reference (NIH)PPIAL4D
Genomic and cartography
GoldenPath hg38 (UCSC)PPIAL4D  -     chr1:144372875-144373659 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPIAL4D  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblPPIAL4D - 1q21.1 [CytoView hg19]  PPIAL4D - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBIPPIAL4D [Mapview hg19]  PPIAL4D [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001164261
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPIAL4D
Cluster EST : UnigeneHs.730589 [ NCBI ]
CGAP (NCI)Hs.730589
Gene ExpressionPPIAL4D [ NCBI-GEO ]   PPIAL4D [ EBI - ARRAY_EXPRESS ]   PPIAL4D [ SEEK ]   PPIAL4D [ MEM ]
Gene Expression Viewer (FireBrowse)PPIAL4D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645142
GTEX Portal (Tissue expression)PPIAL4D
Protein : pattern, domain, 3D structure
UniProt/SwissProtF5H284   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF5H284  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF5H284
Splice isoforms : SwissVarF5H284
PhosPhoSitePlusF5H284
Domaine pattern : Prosite (Expaxy)CSA_PPIASE_1 (PS00170)    CSA_PPIASE_2 (PS50072)   
Domains : Interpro (EBI)Cyclophilin-like_dom    Cyclophilin-type_PPIase    Cyclophilin-type_PPIase_CS    Cyclophilin-type_PPIase_dom   
Domain families : Pfam (Sanger)Pro_isomerase (PF00160)   
Domain families : Pfam (NCBI)pfam00160   
Conserved Domain (NCBI)PPIAL4D
DMDM Disease mutations645142
Blocks (Seattle)PPIAL4D
SuperfamilyF5H284
Peptide AtlasF5H284
IPIIPI00455871   
Protein Interaction databases
DIP (DOE-UCLA)F5H284
IntAct (EBI)F5H284
BioGRIDPPIAL4D
STRING (EMBL)PPIAL4D
ZODIACPPIAL4D
Ontologies - Pathways
QuickGOF5H284
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  cytoplasm  protein folding  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  cytoplasm  protein folding  
NDEx NetworkPPIAL4D
Atlas of Cancer Signalling NetworkPPIAL4D
Wikipedia pathwaysPPIAL4D
Orthology - Evolution
OrthoDB645142
Phylogenetic Trees/Animal Genes : TreeFamPPIAL4D
HOVERGENF5H284
HOGENOMF5H284
Homologs : HomoloGenePPIAL4D
Homology/Alignments : Family Browser (UCSC)PPIAL4D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPIAL4D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPIAL4D
dbVarPPIAL4D
ClinVarPPIAL4D
1000_GenomesPPIAL4D 
Exome Variant ServerPPIAL4D
ExAC (Exome Aggregation Consortium)PPIAL4D (select the gene name)
Genetic variants : HAPMAP645142
Genomic Variants (DGV)PPIAL4D [DGVbeta]
DECIPHERPPIAL4D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPIAL4D 
Mutations
ICGC Data PortalPPIAL4D 
TCGA Data PortalPPIAL4D 
Broad Tumor PortalPPIAL4D
OASIS PortalPPIAL4D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPIAL4D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPIAL4D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPIAL4D
DgiDB (Drug Gene Interaction Database)PPIAL4D
DoCM (Curated mutations)PPIAL4D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPIAL4D (select a term)
intoGenPPIAL4D
Cancer3DPPIAL4D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPPIAL4D
Genetic Testing Registry PPIAL4D
NextProtF5H284 [Medical]
TSGene645142
GENETestsPPIAL4D
Huge Navigator PPIAL4D [HugePedia]
snp3D : Map Gene to Disease645142
BioCentury BCIQPPIAL4D
ClinGenPPIAL4D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645142
Chemical/Pharm GKB GenePA165752246
Clinical trialPPIAL4D
Miscellaneous
canSAR (ICR)PPIAL4D (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPIAL4D
EVEXPPIAL4D
GoPubMedPPIAL4D
iHOPPPIAL4D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:49:19 CEST 2017

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