Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PPIAL4F (peptidylprolyl isomerase A like 4F)

Identity

Other alias-
HGNC (Hugo) PPIAL4F
LocusID (NCBI) 728945
Atlas_Id 72125
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 144372875 and ends at 144373659 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPIAL4F   33999
Cards
Entrez_Gene (NCBI)PPIAL4F  728945  peptidylprolyl isomerase A like 4F
Aliases
GeneCards (Weizmann)PPIAL4F
Ensembl hg19 (Hinxton)ENSG00000279782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279782 [Gene_View]  chr1:144372875-144373659 [Contig_View]  PPIAL4F [Vega]
ICGC DataPortalENSG00000279782
TCGA cBioPortalPPIAL4F
AceView (NCBI)PPIAL4F
Genatlas (Paris)PPIAL4F
WikiGenes728945
SOURCE (Princeton)PPIAL4F
Genetics Home Reference (NIH)PPIAL4F
Genomic and cartography
GoldenPath hg38 (UCSC)PPIAL4F  -     chr1:144372875-144373659 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPIAL4F  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblPPIAL4F - 1q21.1 [CytoView hg19]  PPIAL4F - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBIPPIAL4F [Mapview hg19]  PPIAL4F [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001164262
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_009697 NT_187520
Consensus coding sequences : CCDS (NCBI)PPIAL4F
Alternative Splicing GalleryENSG00000279782
Gene ExpressionPPIAL4F [ NCBI-GEO ]   PPIAL4F [ EBI - ARRAY_EXPRESS ]   PPIAL4F [ SEEK ]   PPIAL4F [ MEM ]
Gene Expression Viewer (FireBrowse)PPIAL4F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728945
GTEX Portal (Tissue expression)PPIAL4F
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DN26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DN26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DN26
Splice isoforms : SwissVarP0DN26
PhosPhoSitePlusP0DN26
Domaine pattern : Prosite (Expaxy)CSA_PPIASE_1 (PS00170)    CSA_PPIASE_2 (PS50072)   
Domains : Interpro (EBI)Cyclophilin-like_dom    Cyclophilin-type_PPIase    Cyclophilin-type_PPIase_CS    Cyclophilin-type_PPIase_dom   
Domain families : Pfam (Sanger)Pro_isomerase (PF00160)   
Domain families : Pfam (NCBI)pfam00160   
Conserved Domain (NCBI)PPIAL4F
DMDM Disease mutations728945
Blocks (Seattle)PPIAL4F
SuperfamilyP0DN26
Human Protein AtlasENSG00000279782
Peptide AtlasP0DN26
Protein Interaction databases
DIP (DOE-UCLA)P0DN26
IntAct (EBI)P0DN26
FunCoupENSG00000279782
BioGRIDPPIAL4F
STRING (EMBL)PPIAL4F
ZODIACPPIAL4F
Ontologies - Pathways
QuickGOP0DN26
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  cytoplasm  protein folding  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  cytoplasm  protein folding  
NDEx NetworkPPIAL4F
Atlas of Cancer Signalling NetworkPPIAL4F
Wikipedia pathwaysPPIAL4F
Orthology - Evolution
OrthoDB728945
GeneTree (enSembl)ENSG00000279782
Phylogenetic Trees/Animal Genes : TreeFamPPIAL4F
HOVERGENP0DN26
HOGENOMP0DN26
Homologs : HomoloGenePPIAL4F
Homology/Alignments : Family Browser (UCSC)PPIAL4F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPIAL4F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPIAL4F
dbVarPPIAL4F
ClinVarPPIAL4F
1000_GenomesPPIAL4F 
Exome Variant ServerPPIAL4F
ExAC (Exome Aggregation Consortium)PPIAL4F (select the gene name)
Genetic variants : HAPMAP728945
Genomic Variants (DGV)PPIAL4F [DGVbeta]
DECIPHERPPIAL4F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPIAL4F 
Mutations
ICGC Data PortalPPIAL4F 
TCGA Data PortalPPIAL4F 
Broad Tumor PortalPPIAL4F
OASIS PortalPPIAL4F [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPIAL4F
BioMutasearch PPIAL4F
DgiDB (Drug Gene Interaction Database)PPIAL4F
DoCM (Curated mutations)PPIAL4F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPIAL4F (select a term)
intoGenPPIAL4F
Cancer3DPPIAL4F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPPIAL4F
Genetic Testing Registry PPIAL4F
NextProtP0DN26 [Medical]
TSGene728945
GENETestsPPIAL4F
Target ValidationPPIAL4F
Huge Navigator PPIAL4F [HugePedia]
snp3D : Map Gene to Disease728945
BioCentury BCIQPPIAL4F
ClinGenPPIAL4F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728945
Chemical/Pharm GKB GenePA165752267
Clinical trialPPIAL4F
Miscellaneous
canSAR (ICR)PPIAL4F (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPIAL4F
EVEXPPIAL4F
GoPubMedPPIAL4F
iHOPPPIAL4F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:37:03 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.