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PPIC (peptidylprolyl isomerase C)

Identity

Other aliasCYPC
HGNC (Hugo) PPIC
LocusID (NCBI) 5480
Atlas_Id 56777
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 123023383 and ends at 123036730 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPIC   9256
Cards
Entrez_Gene (NCBI)PPIC  5480  peptidylprolyl isomerase C
AliasesCYPC
GeneCards (Weizmann)PPIC
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:123023383-123036730 [Contig_View]  PPIC [Vega]
TCGA cBioPortalPPIC
AceView (NCBI)PPIC
Genatlas (Paris)PPIC
WikiGenes5480
SOURCE (Princeton)PPIC
Genetics Home Reference (NIH)PPIC
Genomic and cartography
GoldenPath hg38 (UCSC)PPIC  -     chr5:123023383-123036730 -  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPIC  -     5q23.2   [Description]    (hg19-Feb_2009)
EnsemblPPIC - 5q23.2 [CytoView hg19]  PPIC - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBIPPIC [Mapview hg19]  PPIC [Mapview hg38]
OMIM123842   
Gene and transcription
Genbank (Entrez)AK290321 AK304053 BC002678 BG721394 BU075157
RefSeq transcript (Entrez)NM_000943
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPIC
Cluster EST : UnigeneHs.110364 [ NCBI ]
CGAP (NCI)Hs.110364
Gene ExpressionPPIC [ NCBI-GEO ]   PPIC [ EBI - ARRAY_EXPRESS ]   PPIC [ SEEK ]   PPIC [ MEM ]
Gene Expression Viewer (FireBrowse)PPIC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5480
GTEX Portal (Tissue expression)PPIC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP45877   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP45877  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP45877
Splice isoforms : SwissVarP45877
Catalytic activity : Enzyme5.2.1.8 [ Enzyme-Expasy ]   5.2.1.85.2.1.8 [ IntEnz-EBI ]   5.2.1.8 [ BRENDA ]   5.2.1.8 [ KEGG ]   
PhosPhoSitePlusP45877
Domaine pattern : Prosite (Expaxy)CSA_PPIASE_1 (PS00170)    CSA_PPIASE_2 (PS50072)   
Domains : Interpro (EBI)Cyclophilin-like_dom    Cyclophilin-type_PPIase    Cyclophilin-type_PPIase_CS    Cyclophilin-type_PPIase_dom   
Domain families : Pfam (Sanger)Pro_isomerase (PF00160)   
Domain families : Pfam (NCBI)pfam00160   
Conserved Domain (NCBI)PPIC
DMDM Disease mutations5480
Blocks (Seattle)PPIC
PDB (SRS)2ESL   
PDB (PDBSum)2ESL   
PDB (IMB)2ESL   
PDB (RSDB)2ESL   
Structural Biology KnowledgeBase2ESL   
SCOP (Structural Classification of Proteins)2ESL   
CATH (Classification of proteins structures)2ESL   
SuperfamilyP45877
Peptide AtlasP45877
IPIIPI00024129   
Protein Interaction databases
DIP (DOE-UCLA)P45877
IntAct (EBI)P45877
BioGRIDPPIC
STRING (EMBL)PPIC
ZODIACPPIC
Ontologies - Pathways
QuickGOP45877
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  protein binding  cytoplasm  protein folding  cyclosporin A binding  extracellular exosome  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  protein binding  cytoplasm  protein folding  cyclosporin A binding  extracellular exosome  
NDEx NetworkPPIC
Atlas of Cancer Signalling NetworkPPIC
Wikipedia pathwaysPPIC
Orthology - Evolution
OrthoDB5480
Phylogenetic Trees/Animal Genes : TreeFamPPIC
HOVERGENP45877
HOGENOMP45877
Homologs : HomoloGenePPIC
Homology/Alignments : Family Browser (UCSC)PPIC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPIC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPIC
dbVarPPIC
ClinVarPPIC
1000_GenomesPPIC 
Exome Variant ServerPPIC
ExAC (Exome Aggregation Consortium)PPIC (select the gene name)
Genetic variants : HAPMAP5480
Genomic Variants (DGV)PPIC [DGVbeta]
DECIPHERPPIC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPIC 
Mutations
ICGC Data PortalPPIC 
TCGA Data PortalPPIC 
Broad Tumor PortalPPIC
OASIS PortalPPIC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPIC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPIC
BioMutasearch PPIC
DgiDB (Drug Gene Interaction Database)PPIC
DoCM (Curated mutations)PPIC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPIC (select a term)
intoGenPPIC
Cancer3DPPIC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123842   
Orphanet
MedgenPPIC
Genetic Testing Registry PPIC
NextProtP45877 [Medical]
TSGene5480
GENETestsPPIC
Target ValidationPPIC
Huge Navigator PPIC [HugePedia]
snp3D : Map Gene to Disease5480
BioCentury BCIQPPIC
ClinGenPPIC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5480
Chemical/Pharm GKB GenePA33581
Clinical trialPPIC
Miscellaneous
canSAR (ICR)PPIC (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPIC
EVEXPPIC
GoPubMedPPIC
iHOPPPIC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:50:32 CEST 2017

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