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PPIL3 (peptidylprolyl isomerase like 3)

Identity

Alias_namespeptidylprolyl isomerase (cyclophilin)-like 3
Alias_symbol (synonym)CyPJ
Other aliasCYPJ
HGNC (Hugo) PPIL3
LocusID (NCBI) 53938
Atlas_Id 53974
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 201735679 and ends at 201753849 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PPIL3 (2q33.1) / CLK1 (2q33.1)PPIL3 (2q33.1) / NEMF (14q21.3)PPIL3 (2q33.1) / RPH3A (12q24.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPIL3   9262
Cards
Entrez_Gene (NCBI)PPIL3  53938  peptidylprolyl isomerase like 3
AliasesCYPJ
GeneCards (Weizmann)PPIL3
Ensembl hg19 (Hinxton)ENSG00000240344 [Gene_View]  chr2:201735679-201753849 [Contig_View]  PPIL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000240344 [Gene_View]  chr2:201735679-201753849 [Contig_View]  PPIL3 [Vega]
ICGC DataPortalENSG00000240344
TCGA cBioPortalPPIL3
AceView (NCBI)PPIL3
Genatlas (Paris)PPIL3
WikiGenes53938
SOURCE (Princeton)PPIL3
Genetics Home Reference (NIH)PPIL3
Genomic and cartography
GoldenPath hg19 (UCSC)PPIL3  -     chr2:201735679-201753849 -  2q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PPIL3  -     2q33.1   [Description]    (hg38-Dec_2013)
EnsemblPPIL3 - 2q33.1 [CytoView hg19]  PPIL3 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBIPPIL3 [Mapview hg19]  PPIL3 [Mapview hg38]
OMIM615811   
Gene and transcription
Genbank (Entrez)AF146799 AF251049 AF271652 AF414127 AK297804
RefSeq transcript (Entrez)NM_032472 NM_130906 NM_131916
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)PPIL3
Cluster EST : UnigeneHs.121076 [ NCBI ]
CGAP (NCI)Hs.121076
Alternative Splicing GalleryENSG00000240344
Gene ExpressionPPIL3 [ NCBI-GEO ]   PPIL3 [ EBI - ARRAY_EXPRESS ]   PPIL3 [ SEEK ]   PPIL3 [ MEM ]
Gene Expression Viewer (FireBrowse)PPIL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53938
GTEX Portal (Tissue expression)PPIL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2H8
Splice isoforms : SwissVarQ9H2H8
Catalytic activity : Enzyme5.2.1.8 [ Enzyme-Expasy ]   5.2.1.85.2.1.8 [ IntEnz-EBI ]   5.2.1.8 [ BRENDA ]   5.2.1.8 [ KEGG ]   
PhosPhoSitePlusQ9H2H8
Domaine pattern : Prosite (Expaxy)CSA_PPIASE_1 (PS00170)    CSA_PPIASE_2 (PS50072)   
Domains : Interpro (EBI)Cyclophilin-like_dom    Cyclophilin-type_PPIase    Cyclophilin-type_PPIase_CS    Cyclophilin-type_PPIase_dom   
Domain families : Pfam (Sanger)Pro_isomerase (PF00160)   
Domain families : Pfam (NCBI)pfam00160   
Conserved Domain (NCBI)PPIL3
DMDM Disease mutations53938
Blocks (Seattle)PPIL3
PDB (SRS)1XYH    2OJU    2OK3   
PDB (PDBSum)1XYH    2OJU    2OK3   
PDB (IMB)1XYH    2OJU    2OK3   
PDB (RSDB)1XYH    2OJU    2OK3   
Structural Biology KnowledgeBase1XYH    2OJU    2OK3   
SCOP (Structural Classification of Proteins)1XYH    2OJU    2OK3   
CATH (Classification of proteins structures)1XYH    2OJU    2OK3   
SuperfamilyQ9H2H8
Human Protein AtlasENSG00000240344
Peptide AtlasQ9H2H8
HPRD15163
IPIIPI00300952   IPI00032473   IPI00909552   IPI00384234   IPI00916666   IPI00916822   IPI00916407   IPI00917407   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2H8
IntAct (EBI)Q9H2H8
FunCoupENSG00000240344
BioGRIDPPIL3
STRING (EMBL)PPIL3
ZODIACPPIL3
Ontologies - Pathways
QuickGOQ9H2H8
Ontology : AmiGOmRNA splicing, via spliceosome  protein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  protein binding  protein folding  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  protein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  protein binding  protein folding  catalytic step 2 spliceosome  
NDEx NetworkPPIL3
Atlas of Cancer Signalling NetworkPPIL3
Wikipedia pathwaysPPIL3
Orthology - Evolution
OrthoDB53938
GeneTree (enSembl)ENSG00000240344
Phylogenetic Trees/Animal Genes : TreeFamPPIL3
HOVERGENQ9H2H8
HOGENOMQ9H2H8
Homologs : HomoloGenePPIL3
Homology/Alignments : Family Browser (UCSC)PPIL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPIL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPIL3
dbVarPPIL3
ClinVarPPIL3
1000_GenomesPPIL3 
Exome Variant ServerPPIL3
ExAC (Exome Aggregation Consortium)PPIL3 (select the gene name)
Genetic variants : HAPMAP53938
Genomic Variants (DGV)PPIL3 [DGVbeta]
DECIPHER (Syndromes)2:201735679-201753849  ENSG00000240344
CONAN: Copy Number AnalysisPPIL3 
Mutations
ICGC Data PortalPPIL3 
TCGA Data PortalPPIL3 
Broad Tumor PortalPPIL3
OASIS PortalPPIL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPIL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPIL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPIL3
DgiDB (Drug Gene Interaction Database)PPIL3
DoCM (Curated mutations)PPIL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPIL3 (select a term)
intoGenPPIL3
Cancer3DPPIL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615811   
Orphanet
MedgenPPIL3
Genetic Testing Registry PPIL3
NextProtQ9H2H8 [Medical]
TSGene53938
GENETestsPPIL3
Huge Navigator PPIL3 [HugePedia]
snp3D : Map Gene to Disease53938
BioCentury BCIQPPIL3
ClinGenPPIL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53938
Chemical/Pharm GKB GenePA33589
Clinical trialPPIL3
Miscellaneous
canSAR (ICR)PPIL3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPIL3
EVEXPPIL3
GoPubMedPPIL3
iHOPPPIL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:15:13 CEST 2017

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