Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PPM1F (protein phosphatase, Mg2+/Mn2+ dependent 1F)

Identity

Alias (NCBI)CAMKP
CaMKPase
FEM-2
POPX2
hFEM-2
HGNC (Hugo) PPM1F
HGNC Alias symbFEM-2
KIAA0015
POPX2
CaMKPase
CAMKP
HGNC Alias namepartner of PIX 2
 Ca(2+)/calmodulin-dependent protein kinase phosphatase
HGNC Previous nameprotein phosphatase 1F (PP2C domain containing)
 protein phosphatase, Mg2+/Mn2+ dependent, 1F
LocusID (NCBI) 9647
Atlas_Id 43425
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 21919425 and ends at 21952848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PPM1F (22q11.22) / HDAC4 (2q37.3)PPM1F (22q11.22) / POLR3A (10q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PPM1F   19388
Cards
Entrez_Gene (NCBI)PPM1F    protein phosphatase, Mg2+/Mn2+ dependent 1F
AliasesCAMKP; CaMKPase; FEM-2; POPX2; 
hFEM-2
GeneCards (Weizmann)PPM1F
Ensembl hg19 (Hinxton)ENSG00000100034 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100034 [Gene_View]  ENSG00000100034 [Sequence]  chr22:21919425-21952848 [Contig_View]  PPM1F [Vega]
ICGC DataPortalENSG00000100034
TCGA cBioPortalPPM1F
AceView (NCBI)PPM1F
Genatlas (Paris)PPM1F
SOURCE (Princeton)PPM1F
Genetics Home Reference (NIH)PPM1F
Genomic and cartography
GoldenPath hg38 (UCSC)PPM1F  -     chr22:21919425-21952848 -  22q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPM1F  -     22q11.22   [Description]    (hg19-Feb_2009)
GoldenPathPPM1F - 22q11.22 [CytoView hg19]  PPM1F - 22q11.22 [CytoView hg38]
ImmunoBaseENSG00000100034
genome Data Viewer NCBIPPM1F [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF305840 AF520615 AK126377 AK291628 AK294557
RefSeq transcript (Entrez)NM_014634
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPM1F
Alternative Splicing GalleryENSG00000100034
Gene ExpressionPPM1F [ NCBI-GEO ]   PPM1F [ EBI - ARRAY_EXPRESS ]   PPM1F [ SEEK ]   PPM1F [ MEM ]
Gene Expression Viewer (FireBrowse)PPM1F [ Firebrowse - Broad ]
GenevisibleExpression of PPM1F in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9647
GTEX Portal (Tissue expression)PPM1F
Human Protein AtlasENSG00000100034-PPM1F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49593   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49593  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49593
Splice isoforms : SwissVarP49593
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusP49593
Domaine pattern : Prosite (Expaxy)PPM_1 (PS01032)    PPM_2 (PS51746)   
Domains : Interpro (EBI)PP2C    PP2C_BS    PPM-type_dom_sf    PPM-type_phosphatase_dom   
Domain families : Pfam (Sanger)PP2C (PF00481)   
Domain families : Pfam (NCBI)pfam00481   
Domain families : Smart (EMBL)PP2C_SIG (SM00331)  PP2Cc (SM00332)  
Conserved Domain (NCBI)PPM1F
Blocks (Seattle)PPM1F
SuperfamilyP49593
Human Protein Atlas [tissue]ENSG00000100034-PPM1F [tissue]
Peptide AtlasP49593
HPRD10163
IPIIPI00291412   IPI00878280   IPI00878160   IPI00877996   IPI00878193   
Protein Interaction databases
DIP (DOE-UCLA)P49593
IntAct (EBI)P49593
BioGRIDPPM1F
STRING (EMBL)PPM1F
ZODIACPPM1F
Ontologies - Pathways
QuickGOP49593
Ontology : AmiGOprotein serine/threonine phosphatase activity  protein serine/threonine phosphatase activity  magnesium-dependent protein serine/threonine phosphatase activity  protein binding  nucleus  cytosol  cytosol  negative regulation of protein kinase activity  negative regulation of protein kinase activity  protein dephosphorylation  protein tyrosine/serine/threonine phosphatase activity  positive regulation of gene expression  positive regulation of epithelial cell migration  positive regulation of cell-substrate adhesion  histone dephosphorylation  positive regulation of cell migration  protein-containing complex  negative regulation of peptidyl-serine phosphorylation  calmodulin-dependent protein phosphatase activity  cellular response to drug  peptidyl-threonine dephosphorylation  positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  negative regulation of protein kinase activity by regulation of protein phosphorylation  negative regulation of transcription, DNA-templated  positive regulation of growth  metal ion binding  perinuclear region of cytoplasm  positive regulation of chemotaxis  negative regulation of protein transport  positive regulation of stress fiber assembly  positive regulation of stress fiber assembly  positive regulation of stress fiber assembly  positive regulation of focal adhesion assembly  peptidyl-serine dephosphorylation  intrinsic apoptotic signaling pathway  protein serine phosphatase activity  protein threonine phosphatase activity  regulation of cellular protein localization  negative regulation of cell-cell adhesion mediated by cadherin  
Ontology : EGO-EBIprotein serine/threonine phosphatase activity  protein serine/threonine phosphatase activity  magnesium-dependent protein serine/threonine phosphatase activity  protein binding  nucleus  cytosol  cytosol  negative regulation of protein kinase activity  negative regulation of protein kinase activity  protein dephosphorylation  protein tyrosine/serine/threonine phosphatase activity  positive regulation of gene expression  positive regulation of epithelial cell migration  positive regulation of cell-substrate adhesion  histone dephosphorylation  positive regulation of cell migration  protein-containing complex  negative regulation of peptidyl-serine phosphorylation  calmodulin-dependent protein phosphatase activity  cellular response to drug  peptidyl-threonine dephosphorylation  positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  negative regulation of protein kinase activity by regulation of protein phosphorylation  negative regulation of transcription, DNA-templated  positive regulation of growth  metal ion binding  perinuclear region of cytoplasm  positive regulation of chemotaxis  negative regulation of protein transport  positive regulation of stress fiber assembly  positive regulation of stress fiber assembly  positive regulation of stress fiber assembly  positive regulation of focal adhesion assembly  peptidyl-serine dephosphorylation  intrinsic apoptotic signaling pathway  protein serine phosphatase activity  protein threonine phosphatase activity  regulation of cellular protein localization  negative regulation of cell-cell adhesion mediated by cadherin  
NDEx NetworkPPM1F
Atlas of Cancer Signalling NetworkPPM1F
Wikipedia pathwaysPPM1F
Orthology - Evolution
OrthoDB9647
GeneTree (enSembl)ENSG00000100034
Phylogenetic Trees/Animal Genes : TreeFamPPM1F
HOGENOMP49593
Homologs : HomoloGenePPM1F
Homology/Alignments : Family Browser (UCSC)PPM1F
Gene fusions - Rearrangements
Fusion : QuiverPPM1F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPM1F [hg38]
dbVarPPM1F
ClinVarPPM1F
MonarchPPM1F
1000_GenomesPPM1F 
Exome Variant ServerPPM1F
GNOMAD BrowserENSG00000100034
Varsome BrowserPPM1F
Genomic Variants (DGV)PPM1F [DGVbeta]
DECIPHERPPM1F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPM1F 
Mutations
ICGC Data PortalPPM1F 
TCGA Data PortalPPM1F 
Broad Tumor PortalPPM1F
OASIS PortalPPM1F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPM1F  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPPM1F
Mutations and Diseases : HGMDPPM1F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPM1F
DgiDB (Drug Gene Interaction Database)PPM1F
DoCM (Curated mutations)PPM1F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPM1F (select a term)
intoGenPPM1F
Cancer3DPPM1F(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPPM1F
MedgenPPM1F
Genetic Testing Registry PPM1F
NextProtP49593 [Medical]
GENETestsPPM1F
Target ValidationPPM1F
Huge Navigator PPM1F [HugePedia]
ClinGenPPM1F
Clinical trials, drugs, therapy
MyCancerGenomePPM1F
Protein Interactions : CTD
Pharm GKB GenePA134935566
PharosP49593
Clinical trialPPM1F
Miscellaneous
canSAR (ICR)PPM1F (select the gene name)
HarmonizomePPM1F
DataMed IndexPPM1F
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPPM1F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:40:32 CET 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.