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PPM1N (protein phosphatase, Mg2+/Mn2+ dependent 1N (putative))

Identity

Alias_namesprotein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)
Alias_symbol (synonym)FLJ40125
Other alias-
HGNC (Hugo) PPM1N
LocusID (NCBI) 147699
Atlas_Id 72140
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45498473 and ends at 45502506 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPINT2 (19q13.2) / PPM1N (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPM1N   26845
Cards
Entrez_Gene (NCBI)PPM1N  147699  protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)
Aliases
GeneCards (Weizmann)PPM1N
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:45498473-45502506 [Contig_View]  PPM1N [Vega]
TCGA cBioPortalPPM1N
AceView (NCBI)PPM1N
Genatlas (Paris)PPM1N
WikiGenes147699
SOURCE (Princeton)PPM1N
Genetics Home Reference (NIH)PPM1N
Genomic and cartography
GoldenPath hg38 (UCSC)PPM1N  -     chr19:45498473-45502506 +  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPM1N  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblPPM1N - 19q13.32 [CytoView hg19]  PPM1N - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIPPM1N [Mapview hg19]  PPM1N [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097444 BC028228 BC062452
RefSeq transcript (Entrez)NM_001080401 NM_178494
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPM1N
Cluster EST : UnigeneHs.532872 [ NCBI ]
CGAP (NCI)Hs.532872
Gene ExpressionPPM1N [ NCBI-GEO ]   PPM1N [ EBI - ARRAY_EXPRESS ]   PPM1N [ SEEK ]   PPM1N [ MEM ]
Gene Expression Viewer (FireBrowse)PPM1N [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147699
GTEX Portal (Tissue expression)PPM1N
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N819   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N819  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N819
Splice isoforms : SwissVarQ8N819
PhosPhoSitePlusQ8N819
Domaine pattern : Prosite (Expaxy)PPM_2 (PS51746)   
Domains : Interpro (EBI)PP2C    PP2C_C    PPM-type_phosphatase_dom   
Domain families : Pfam (Sanger)PP2C (PF00481)    PP2C_C (PF07830)   
Domain families : Pfam (NCBI)pfam00481    pfam07830   
Domain families : Smart (EMBL)PP2Cc (SM00332)  
Conserved Domain (NCBI)PPM1N
DMDM Disease mutations147699
Blocks (Seattle)PPM1N
SuperfamilyQ8N819
Peptide AtlasQ8N819
HPRD08270
IPIIPI00647423   IPI00167290   IPI00894383   IPI00795430   IPI00892566   IPI00892815   IPI00893168   
Protein Interaction databases
DIP (DOE-UCLA)Q8N819
IntAct (EBI)Q8N819
BioGRIDPPM1N
STRING (EMBL)PPM1N
ZODIACPPM1N
Ontologies - Pathways
QuickGOQ8N819
Ontology : AmiGOmagnesium ion binding  protein serine/threonine phosphatase activity  protein dephosphorylation  manganese ion binding  
Ontology : EGO-EBImagnesium ion binding  protein serine/threonine phosphatase activity  protein dephosphorylation  manganese ion binding  
NDEx NetworkPPM1N
Atlas of Cancer Signalling NetworkPPM1N
Wikipedia pathwaysPPM1N
Orthology - Evolution
OrthoDB147699
Phylogenetic Trees/Animal Genes : TreeFamPPM1N
HOVERGENQ8N819
HOGENOMQ8N819
Homologs : HomoloGenePPM1N
Homology/Alignments : Family Browser (UCSC)PPM1N
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPM1N [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPM1N
dbVarPPM1N
ClinVarPPM1N
1000_GenomesPPM1N 
Exome Variant ServerPPM1N
ExAC (Exome Aggregation Consortium)PPM1N (select the gene name)
Genetic variants : HAPMAP147699
Genomic Variants (DGV)PPM1N [DGVbeta]
DECIPHERPPM1N [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPM1N 
Mutations
ICGC Data PortalPPM1N 
TCGA Data PortalPPM1N 
Broad Tumor PortalPPM1N
OASIS PortalPPM1N [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPM1N  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPM1N
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPM1N
DgiDB (Drug Gene Interaction Database)PPM1N
DoCM (Curated mutations)PPM1N (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPM1N (select a term)
intoGenPPM1N
Cancer3DPPM1N(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPPM1N
Genetic Testing Registry PPM1N
NextProtQ8N819 [Medical]
TSGene147699
GENETestsPPM1N
Target ValidationPPM1N
Huge Navigator PPM1N [HugePedia]
snp3D : Map Gene to Disease147699
BioCentury BCIQPPM1N
ClinGenPPM1N
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147699
Chemical/Pharm GKB GenePA165394107
Clinical trialPPM1N
Miscellaneous
canSAR (ICR)PPM1N (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPM1N
EVEXPPM1N
GoPubMedPPM1N
iHOPPPM1N
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:06 CEST 2017

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