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PPP1R16A (protein phosphatase 1, regulatory subunit 16A)

Identity

Other namesMYPT3
HGNC (Hugo) PPP1R16A
LocusID (NCBI) 84988
Location 8q24.3
Location_base_pair Starts at 145722109 and ends at 145727504 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PPP1R16A   14941
Entrez_Gene (NCBI)PPP1R16A  84988  protein phosphatase 1, regulatory subunit 16A
Cards
GeneCards (Weizmann)PPP1R16A
Ensembl (Hinxton)ENSG00000160972 [Gene_View]  chr8:145722109-145727504 [Contig_View]  PPP1R16A [Vega]
AceView (NCBI)PPP1R16A
Genatlas (Paris)PPP1R16A
SOURCE (Stanford)NM_032902
Genomic and cartography
GoldenPath (UCSC)PPP1R16A  -  8q24.3   chr8:145722109-145727504 +  8q24.3   [Description]    (hg19-Feb_2009)
EnsemblPPP1R16A - 8q24.3 [CytoView]
Mapping of homologs : NCBIPPP1R16A [Mapview]
OMIM609172   
Gene and transcription
Genbank (Entrez)AK090471 BC007854 BC049841 BC053506 BT006845
RefSeq transcript (SRS)NM_032902
RefSeq transcript (Entrez)NM_032902
RefSeq genomic (SRS)AC_000140 NC_000008 NC_018919 NT_037704 NW_001839142 NW_004078037
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NT_037704 NW_001839142 NW_004078037
Consensus coding sequences : CCDS (NCBI)PPP1R16A
Cluster EST : UnigeneHs.521937 [ SRS ] Hs.521937 [ NCBI ]
CGAP (NCI)Hs.521937
Alternative Splicing : Fast-db (Paris)GSHG0029329
Alternative Splicing GalleryENSG00000160972
Gene ExpressionPPP1R16A [ NCBI-GEO ]   PPP1R16A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I34 (SRS) Q96I34 (Uniprot)
NextProtQ96I34
With graphics : InterProQ96I34
Splice isoforms : SwissVarQ96I34(Swissvar)
Domaine pattern : Prosite (SRS)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (SRS)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Pase-1_reg_su_16AB_euk   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Pase-1_reg_su_16AB_euk   
Related proteins : CluSTrQ96I34
Domain families : Pfam (SRS)Ank_2 (PF12796)   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
DMDM84988
Blocks (Seattle)Q96I34
Human Protein AtlasENSG00000160972
HPRD16454
IPIIPI00063273   IPI00978426   IPI00979044   
Protein Interaction databases
DIP (DOE-UCLA)Q96I34
IntAct (EBI)Q96I34
FunCoupENSG00000160972
REACTOMEPPP1R16A
Protein Interaction Database84988
BioGRIDPPP1R16A
InParanoidQ96I34
Interologous Interaction database Q96I34
IntegromeDBPPP1R16A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PPP1R16A
SNP (GeneSNP Utah)PPP1R16A
SNP : HGBasePPP1R16A
Genetic variants : HAPMAPPPP1R16A
Somatic Mutations in Cancer : COSMICPPP1R16A 
CONAN: Copy Number AnalysisPPP1R16A 
Mutations and Diseases : HGMDPPP1R16A
OMIM609172   
GENETests609172   
Disease Genetic AssociationPPP1R16A
Huge Navigator PPP1R16A [HugePedia]  PPP1R16A [HugeCancerGEM]
Genomic VariantsPPP1R16A  PPP1R16A [DGVbeta]
snp3D : Map Gene to Disease84988
General knowledge
Homologs : HomoloGenePPP1R16A
Homology/Alignments : Family Browser (UCSC)PPP1R16A
Phylogenetic Trees/Animal Genes : TreeFamPPP1R16A
Chemical/Protein Interactions : CTD84988
Chemical/Pharm GKB GenePA33634
Clinical trialPPP1R16A
Cancer Resource (Charite)ENSG00000160972
Ontology : AmiGOprotein binding  plasma membrane  
Ontology : EGO-EBIprotein binding  plasma membrane  
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
PubGenePPP1R16A
iHOPPPP1R16A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:45:56 CEST 2013
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