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PPP1R17 (protein phosphatase 1 regulatory subunit 17)

Identity

Alias_namesC7orf16
chromosome 7 open reading frame 16
protein phosphatase 1, regulatory subunit 17
Alias_symbol (synonym)GSBS
Other alias
HGNC (Hugo) PPP1R17
LocusID (NCBI) 10842
Atlas_Id 72142
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 31687017 and ends at 31708455 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SRRT (7q22.1) / PPP1R17 (7p14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPP1R17   16973
Cards
Entrez_Gene (NCBI)PPP1R17  10842  protein phosphatase 1 regulatory subunit 17
AliasesC7orf16; GSBS
GeneCards (Weizmann)PPP1R17
Ensembl hg19 (Hinxton)ENSG00000106341 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106341 [Gene_View]  chr7:31687017-31708455 [Contig_View]  PPP1R17 [Vega]
ICGC DataPortalENSG00000106341
TCGA cBioPortalPPP1R17
AceView (NCBI)PPP1R17
Genatlas (Paris)PPP1R17
WikiGenes10842
SOURCE (Princeton)PPP1R17
Genetics Home Reference (NIH)PPP1R17
Genomic and cartography
GoldenPath hg38 (UCSC)PPP1R17  -     chr7:31687017-31708455 +  7p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP1R17  -     7p14.3   [Description]    (hg19-Feb_2009)
EnsemblPPP1R17 - 7p14.3 [CytoView hg19]  PPP1R17 - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBIPPP1R17 [Mapview hg19]  PPP1R17 [Mapview hg38]
OMIM143890   604088   
Gene and transcription
Genbank (Entrez)AF071789 AF097730 AK293478 AK312989 BC028094
RefSeq transcript (Entrez)NM_001145123 NM_006658
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP1R17
Cluster EST : UnigeneHs.227011 [ NCBI ]
CGAP (NCI)Hs.227011
Alternative Splicing GalleryENSG00000106341
Gene ExpressionPPP1R17 [ NCBI-GEO ]   PPP1R17 [ EBI - ARRAY_EXPRESS ]   PPP1R17 [ SEEK ]   PPP1R17 [ MEM ]
Gene Expression Viewer (FireBrowse)PPP1R17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10842
GTEX Portal (Tissue expression)PPP1R17
Protein : pattern, domain, 3D structure
UniProt/SwissProtO96001   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO96001  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO96001
Splice isoforms : SwissVarO96001
PhosPhoSitePlusO96001
Domains : Interpro (EBI)PPP1R17   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PPP1R17
DMDM Disease mutations10842
Blocks (Seattle)PPP1R17
SuperfamilyO96001
Human Protein AtlasENSG00000106341
Peptide AtlasO96001
HPRD06820
IPIIPI00014050   IPI00908704   
Protein Interaction databases
DIP (DOE-UCLA)O96001
IntAct (EBI)O96001
FunCoupENSG00000106341
BioGRIDPPP1R17
STRING (EMBL)PPP1R17
ZODIACPPP1R17
Ontologies - Pathways
QuickGOO96001
Ontology : AmiGOprotein serine/threonine phosphatase inhibitor activity  cellular_component  intracellular  central nervous system development  regulation of phosphatase activity  intracellular signal transduction  negative regulation of catalytic activity  
Ontology : EGO-EBIprotein serine/threonine phosphatase inhibitor activity  cellular_component  intracellular  central nervous system development  regulation of phosphatase activity  intracellular signal transduction  negative regulation of catalytic activity  
Pathways : KEGGLong-term depression   
NDEx NetworkPPP1R17
Atlas of Cancer Signalling NetworkPPP1R17
Wikipedia pathwaysPPP1R17
Orthology - Evolution
OrthoDB10842
GeneTree (enSembl)ENSG00000106341
Phylogenetic Trees/Animal Genes : TreeFamPPP1R17
HOVERGENO96001
HOGENOMO96001
Homologs : HomoloGenePPP1R17
Homology/Alignments : Family Browser (UCSC)PPP1R17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP1R17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP1R17
dbVarPPP1R17
ClinVarPPP1R17
1000_GenomesPPP1R17 
Exome Variant ServerPPP1R17
ExAC (Exome Aggregation Consortium)PPP1R17 (select the gene name)
Genetic variants : HAPMAP10842
Genomic Variants (DGV)PPP1R17 [DGVbeta]
DECIPHERPPP1R17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP1R17 
Mutations
ICGC Data PortalPPP1R17 
TCGA Data PortalPPP1R17 
Broad Tumor PortalPPP1R17
OASIS PortalPPP1R17 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPP1R17
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPP1R17
DgiDB (Drug Gene Interaction Database)PPP1R17
DoCM (Curated mutations)PPP1R17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP1R17 (select a term)
intoGenPPP1R17
Cancer3DPPP1R17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM143890    604088   
Orphanet
MedgenPPP1R17
Genetic Testing Registry PPP1R17
NextProtO96001 [Medical]
TSGene10842
GENETestsPPP1R17
Target ValidationPPP1R17
Huge Navigator PPP1R17 [HugePedia]
snp3D : Map Gene to Disease10842
BioCentury BCIQPPP1R17
ClinGenPPP1R17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10842
Chemical/Pharm GKB GenePA134908901
Clinical trialPPP1R17
Miscellaneous
canSAR (ICR)PPP1R17 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP1R17
EVEXPPP1R17
GoPubMedPPP1R17
iHOPPPP1R17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:06 CEST 2017

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