Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PPP1R2P1 (protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 1)

Identity

Alias_namesPPP1R2P
protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 1
Alias_symbol (synonym)IPP-2P
Other alias
HGNC (Hugo) PPP1R2P1
LocusID (NCBI) 100507444
Atlas_Id 72147
Location 6_GL000256v2_alt  [Link to chromosome band 6]
Location_base_pair Starts at 4278391 and ends at 4279067 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PPP1R2P1   9289
Cards
Entrez_Gene (NCBI)PPP1R2P1  100507444  protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 1
AliasesIPP-2P; PPP1R2P
GeneCards (Weizmann)PPP1R2P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6_GL000256v2_alt:4278391-4279067 [Contig_View]  PPP1R2P1 [Vega]
TCGA cBioPortalPPP1R2P1
AceView (NCBI)PPP1R2P1
Genatlas (Paris)PPP1R2P1
WikiGenes100507444
SOURCE (Princeton)PPP1R2P1
Genetics Home Reference (NIH)PPP1R2P1
Genomic and cartography
GoldenPath hg38 (UCSC)PPP1R2P1  -     chr6_GL000256v2_alt:4278391-4279067 -  6_GL000256v2_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP1R2P1  -     6_GL000256v2_alt   [Description]    (hg19-Feb_2009)
EnsemblPPP1R2P1 - 6_GL000256v2_alt [CytoView hg19]  PPP1R2P1 - 6_GL000256v2_alt [CytoView hg38]
Mapping of homologs : NCBIPPP1R2P1 [Mapview hg19]  PPP1R2P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF275684
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_027882 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)PPP1R2P1
Cluster EST : UnigeneHs.730139 [ NCBI ]
CGAP (NCI)Hs.730139
Gene ExpressionPPP1R2P1 [ NCBI-GEO ]   PPP1R2P1 [ EBI - ARRAY_EXPRESS ]   PPP1R2P1 [ SEEK ]   PPP1R2P1 [ MEM ]
Gene Expression Viewer (FireBrowse)PPP1R2P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507444
GTEX Portal (Tissue expression)PPP1R2P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PQ5
Splice isoforms : SwissVarQ96PQ5
PhosPhoSitePlusQ96PQ5
Domains : Interpro (EBI)PPI-2   
Domain families : Pfam (Sanger)IPP-2 (PF04979)   
Domain families : Pfam (NCBI)pfam04979   
Conserved Domain (NCBI)PPP1R2P1
DMDM Disease mutations100507444
Blocks (Seattle)PPP1R2P1
SuperfamilyQ96PQ5
Peptide AtlasQ96PQ5
IPIIPI00044607   
Protein Interaction databases
DIP (DOE-UCLA)Q96PQ5
IntAct (EBI)Q96PQ5
BioGRIDPPP1R2P1
STRING (EMBL)PPP1R2P1
ZODIACPPP1R2P1
Ontologies - Pathways
QuickGOQ96PQ5
Ontology : AmiGOprotein phosphatase type 1 complex  protein phosphatase inhibitor activity  glycogen metabolic process  regulation of signal transduction  negative regulation of catalytic activity  regulation of phosphoprotein phosphatase activity  
Ontology : EGO-EBIprotein phosphatase type 1 complex  protein phosphatase inhibitor activity  glycogen metabolic process  regulation of signal transduction  negative regulation of catalytic activity  regulation of phosphoprotein phosphatase activity  
PPP1R2P1
Atlas of Cancer Signalling NetworkPPP1R2P1
Wikipedia pathwaysPPP1R2P1
Orthology - Evolution
OrthoDB100507444
Phylogenetic Trees/Animal Genes : TreeFamPPP1R2P1
HOVERGENQ96PQ5
HOGENOMQ96PQ5
Homologs : HomoloGenePPP1R2P1
Homolggy/AhiGnments : Family Browser (UCSC)PPP1R2P1
Gene fusions - Rearrangements
Tumor Fusion PortalPPP1R2P1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP1R2P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP1R2P1
dbVarPPP1R2P1
ClinVarPPP1R2P1
1000_GenomesPPP1R2P1 
Exome Variant ServerPPP1R2P1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100507444
Genomic Variants (DGV)PPP1R2P1 [DGVbeta]
DECIPHERPPP1R2P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP1R2P1 
Mutations
ICGC Data PortalPPP1R2P1 
TCGA Data PortalPPP1R2P1 
Broad Tumor PortalPPP1R2P1
OASIS PortalPPP1R2P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPP1R2P1
BioMutasearch PPP1R2P1
DgiDB (Drug Gene Interaction Database)PPP1R2P1
DoCM (Curated mutations)PPP1R2P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP1R2P1 (select a term)
intoGenPPP1R2P1
Cancer3DPPP1R2P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPPP1R2P1
MedgenPPP1R2P1
Genetic Testing Registry PPP1R2P1
NextProtQ96PQ5 [Medical]
TSGene100507444
GENETestsPPP1R2P1
Target ValidationPPP1R2P1
Huge Navigator PPP1R2P1 [HugePedia]
snp3D : Map Gene to Disease100507444
BioCentury BCIQPPP1R2P1
ClinGenPPP1R2P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507444
Chemical/Pharm GKB GenePA33642
Clinical trialPPP1R2P1
Miscellaneous
canSAR (ICR)PPP1R2P1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP1R2P1
EVEXPPP1R2P1
GoPubMedPPP1R2P1
iHOPPPP1R2P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:14:59 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.