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PPP1R2P3 (protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 3)

Identity

Alias_namesprotein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3
Alias_symbol (synonym)MGC87149
Other alias-
HGNC (Hugo) PPP1R2P3
LocusID (NCBI) 153743
Atlas_Id 72148
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 156850538 and ends at 156852528 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPP1R2P3   16318
Cards
Entrez_Gene (NCBI)PPP1R2P3  153743  protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 3
Aliases
GeneCards (Weizmann)PPP1R2P3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:156850538-156852528 [Contig_View]  PPP1R2P3 [Vega]
TCGA cBioPortalPPP1R2P3
AceView (NCBI)PPP1R2P3
Genatlas (Paris)PPP1R2P3
WikiGenes153743
SOURCE (Princeton)PPP1R2P3
Genetics Home Reference (NIH)PPP1R2P3
Genomic and cartography
GoldenPath hg38 (UCSC)PPP1R2P3  -     chr5:156850538-156852528 +  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP1R2P3  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblPPP1R2P3 - 5q33.3 [CytoView hg19]  PPP1R2P3 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIPPP1R2P3 [Mapview hg19]  PPP1R2P3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC066922 JF438008
RefSeq transcript (Entrez)NM_206858
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP1R2P3
Cluster EST : UnigeneHs.567727 [ NCBI ]
CGAP (NCI)Hs.567727
Gene ExpressionPPP1R2P3 [ NCBI-GEO ]   PPP1R2P3 [ EBI - ARRAY_EXPRESS ]   PPP1R2P3 [ SEEK ]   PPP1R2P3 [ MEM ]
Gene Expression Viewer (FireBrowse)PPP1R2P3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153743
GTEX Portal (Tissue expression)PPP1R2P3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NXS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NXS1
Splice isoforms : SwissVarQ6NXS1
PhosPhoSitePlusQ6NXS1
Domains : Interpro (EBI)PPI-2   
Domain families : Pfam (Sanger)IPP-2 (PF04979)   
Domain families : Pfam (NCBI)pfam04979   
Conserved Domain (NCBI)PPP1R2P3
DMDM Disease mutations153743
Blocks (Seattle)PPP1R2P3
SuperfamilyQ6NXS1
Peptide AtlasQ6NXS1
IPIIPI00410126   
Protein Interaction databases
DIP (DOE-UCLA)Q6NXS1
IntAct (EBI)Q6NXS1
BioGRIDPPP1R2P3
STRING (EMBL)PPP1R2P3
ZODIACPPP1R2P3
Ontologies - Pathways
QuickGOQ6NXS1
Ontology : AmiGOprotein phosphatase type 1 complex  protein phosphatase inhibitor activity  protein binding  glycogen metabolic process  regulation of signal transduction  negative regulation of catalytic activity  regulation of phosphoprotein phosphatase activity  
Ontology : EGO-EBIprotein phosphatase type 1 complex  protein phosphatase inhibitor activity  protein binding  glycogen metabolic process  regulation of signal transduction  negative regulation of catalytic activity  regulation of phosphoprotein phosphatase activity  
NDEx NetworkPPP1R2P3
Atlas of Cancer Signalling NetworkPPP1R2P3
Wikipedia pathwaysPPP1R2P3
Orthology - Evolution
OrthoDB153743
Phylogenetic Trees/Animal Genes : TreeFamPPP1R2P3
HOVERGENQ6NXS1
HOGENOMQ6NXS1
Homologs : HomoloGenePPP1R2P3
Homology/Alignments : Family Browser (UCSC)PPP1R2P3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP1R2P3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP1R2P3
dbVarPPP1R2P3
ClinVarPPP1R2P3
1000_GenomesPPP1R2P3 
Exome Variant ServerPPP1R2P3
ExAC (Exome Aggregation Consortium)PPP1R2P3 (select the gene name)
Genetic variants : HAPMAP153743
Genomic Variants (DGV)PPP1R2P3 [DGVbeta]
DECIPHERPPP1R2P3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP1R2P3 
Mutations
ICGC Data PortalPPP1R2P3 
TCGA Data PortalPPP1R2P3 
Broad Tumor PortalPPP1R2P3
OASIS PortalPPP1R2P3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPP1R2P3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPP1R2P3
DgiDB (Drug Gene Interaction Database)PPP1R2P3
DoCM (Curated mutations)PPP1R2P3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP1R2P3 (select a term)
intoGenPPP1R2P3
Cancer3DPPP1R2P3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPPP1R2P3
Genetic Testing Registry PPP1R2P3
NextProtQ6NXS1 [Medical]
TSGene153743
GENETestsPPP1R2P3
Target ValidationPPP1R2P3
Huge Navigator PPP1R2P3 [HugePedia]
snp3D : Map Gene to Disease153743
BioCentury BCIQPPP1R2P3
ClinGenPPP1R2P3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153743
Chemical/Pharm GKB GenePA33644
Clinical trialPPP1R2P3
Miscellaneous
canSAR (ICR)PPP1R2P3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP1R2P3
EVEXPPP1R2P3
GoPubMedPPP1R2P3
iHOPPPP1R2P3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:07 CEST 2017

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