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PPP1R2P9 (protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 9)

Identity

Alias_namesprotein phosphatase 1
Alias_symbol (synonym)I-4
Other alias
HGNC (Hugo) PPP1R2P9
LocusID (NCBI) 80316
Atlas_Id 46803
Location Xp11.3  [Link to chromosome band Xp11]
Location_base_pair Starts at 42636617 and ends at 42637486 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPP1R2P9   16324
Cards
Entrez_Gene (NCBI)PPP1R2P9  80316  protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 9
AliasesI-4
GeneCards (Weizmann)PPP1R2P9
Ensembl hg19 (Hinxton) [Gene_View]  chrX:42636617-42637486 [Contig_View]  PPP1R2P9 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:42636617-42637486 [Contig_View]  PPP1R2P9 [Vega]
TCGA cBioPortalPPP1R2P9
AceView (NCBI)PPP1R2P9
Genatlas (Paris)PPP1R2P9
WikiGenes80316
SOURCE (Princeton)PPP1R2P9
Genetics Home Reference (NIH)PPP1R2P9
Genomic and cartography
GoldenPath hg19 (UCSC)PPP1R2P9  -     chrX:42636617-42637486 -  Xp11.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PPP1R2P9  -     Xp11.3   [Description]    (hg38-Dec_2013)
EnsemblPPP1R2P9 - Xp11.3 [CytoView hg19]  PPP1R2P9 - Xp11.3 [CytoView hg38]
Mapping of homologs : NCBIPPP1R2P9 [Mapview hg19]  PPP1R2P9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB044137 BC056673
RefSeq transcript (Entrez)NM_025210
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)PPP1R2P9
Cluster EST : UnigeneHs.127689 [ NCBI ]
CGAP (NCI)Hs.127689
Gene ExpressionPPP1R2P9 [ NCBI-GEO ]   PPP1R2P9 [ EBI - ARRAY_EXPRESS ]   PPP1R2P9 [ SEEK ]   PPP1R2P9 [ MEM ]
Gene Expression Viewer (FireBrowse)PPP1R2P9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80316
GTEX Portal (Tissue expression)PPP1R2P9
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14990   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14990  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14990
Splice isoforms : SwissVarO14990
PhosPhoSitePlusO14990
Domains : Interpro (EBI)PPI-2   
Domain families : Pfam (Sanger)IPP-2 (PF04979)   
Domain families : Pfam (NCBI)pfam04979   
Conserved Domain (NCBI)PPP1R2P9
DMDM Disease mutations80316
Blocks (Seattle)PPP1R2P9
SuperfamilyO14990
Peptide AtlasO14990
HPRD06593
IPIIPI00018824   
Protein Interaction databases
DIP (DOE-UCLA)O14990
IntAct (EBI)O14990
BioGRIDPPP1R2P9
STRING (EMBL)PPP1R2P9
ZODIACPPP1R2P9
Ontologies - Pathways
QuickGOO14990
Ontology : AmiGOprotein phosphatase type 1 complex  protein phosphatase inhibitor activity  protein phosphatase inhibitor activity  cellular_component  regulation of signal transduction  negative regulation of catalytic activity  negative regulation of catalytic activity  negative regulation of catalytic activity  regulation of phosphoprotein phosphatase activity  
Ontology : EGO-EBIprotein phosphatase type 1 complex  protein phosphatase inhibitor activity  protein phosphatase inhibitor activity  cellular_component  regulation of signal transduction  negative regulation of catalytic activity  negative regulation of catalytic activity  negative regulation of catalytic activity  regulation of phosphoprotein phosphatase activity  
NDEx NetworkPPP1R2P9
Atlas of Cancer Signalling NetworkPPP1R2P9
Wikipedia pathwaysPPP1R2P9
Orthology - Evolution
OrthoDB80316
Phylogenetic Trees/Animal Genes : TreeFamPPP1R2P9
HOVERGENO14990
HOGENOMO14990
Homologs : HomoloGenePPP1R2P9
Homology/Alignments : Family Browser (UCSC)PPP1R2P9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP1R2P9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP1R2P9
dbVarPPP1R2P9
ClinVarPPP1R2P9
1000_GenomesPPP1R2P9 
Exome Variant ServerPPP1R2P9
ExAC (Exome Aggregation Consortium)PPP1R2P9 (select the gene name)
Genetic variants : HAPMAP80316
Genomic Variants (DGV)PPP1R2P9 [DGVbeta]
DECIPHER (Syndromes)X:42636617-42637486  
CONAN: Copy Number AnalysisPPP1R2P9 
Mutations
ICGC Data PortalPPP1R2P9 
TCGA Data PortalPPP1R2P9 
Broad Tumor PortalPPP1R2P9
OASIS PortalPPP1R2P9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPP1R2P9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPP1R2P9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPP1R2P9
DgiDB (Drug Gene Interaction Database)PPP1R2P9
DoCM (Curated mutations)PPP1R2P9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP1R2P9 (select a term)
intoGenPPP1R2P9
Cancer3DPPP1R2P9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPPP1R2P9
Genetic Testing Registry PPP1R2P9
NextProtO14990 [Medical]
TSGene80316
GENETestsPPP1R2P9
Huge Navigator PPP1R2P9 [HugePedia]
snp3D : Map Gene to Disease80316
BioCentury BCIQPPP1R2P9
ClinGenPPP1R2P9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80316
Chemical/Pharm GKB GenePA33650
Clinical trialPPP1R2P9
Miscellaneous
canSAR (ICR)PPP1R2P9 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP1R2P9
EVEXPPP1R2P9
GoPubMedPPP1R2P9
iHOPPPP1R2P9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:19 CEST 2017

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