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PPP1R3A (protein phosphatase 1 regulatory subunit 3A)

Identity

Alias_namesPPP1R3
protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle)
protein phosphatase 1, regulatory (inhibitor) subunit 3A
protein phosphatase 1, regulatory subunit 3A
Alias_symbol (synonym)GM
Other aliasPP1G
HGNC (Hugo) PPP1R3A
LocusID (NCBI) 5506
Atlas_Id 41810
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 113876827 and ends at 113919027 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPP1R3A   9291
Cards
Entrez_Gene (NCBI)PPP1R3A  5506  protein phosphatase 1 regulatory subunit 3A
AliasesGM; PP1G; PPP1R3
GeneCards (Weizmann)PPP1R3A
Ensembl hg19 (Hinxton)ENSG00000154415 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154415 [Gene_View]  chr7:113876827-113919027 [Contig_View]  PPP1R3A [Vega]
ICGC DataPortalENSG00000154415
TCGA cBioPortalPPP1R3A
AceView (NCBI)PPP1R3A
Genatlas (Paris)PPP1R3A
WikiGenes5506
SOURCE (Princeton)PPP1R3A
Genetics Home Reference (NIH)PPP1R3A
Genomic and cartography
GoldenPath hg38 (UCSC)PPP1R3A  -     chr7:113876827-113919027 -  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP1R3A  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblPPP1R3A - 7q31.1 [CytoView hg19]  PPP1R3A - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBIPPP1R3A [Mapview hg19]  PPP1R3A [Mapview hg38]
OMIM125853   600917   604367   
Gene and transcription
Genbank (Entrez)AF024579 BC017405 BC056666 BC070313 BC111452
RefSeq transcript (Entrez)NM_002711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP1R3A
Cluster EST : UnigeneHs.458309 [ NCBI ]
CGAP (NCI)Hs.458309
Alternative Splicing GalleryENSG00000154415
Gene ExpressionPPP1R3A [ NCBI-GEO ]   PPP1R3A [ EBI - ARRAY_EXPRESS ]   PPP1R3A [ SEEK ]   PPP1R3A [ MEM ]
Gene Expression Viewer (FireBrowse)PPP1R3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5506
GTEX Portal (Tissue expression)PPP1R3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16821   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16821  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16821
Splice isoforms : SwissVarQ16821
PhosPhoSitePlusQ16821
Domaine pattern : Prosite (Expaxy)CBM21 (PS51159)   
Domains : Interpro (EBI)CBM21_dom   
Domain families : Pfam (Sanger)CBM_21 (PF03370)   
Domain families : Pfam (NCBI)pfam03370   
Conserved Domain (NCBI)PPP1R3A
DMDM Disease mutations5506
Blocks (Seattle)PPP1R3A
SuperfamilyQ16821
Human Protein AtlasENSG00000154415
Peptide AtlasQ16821
HPRD02950
IPIIPI00003091   IPI00012532   IPI00924432   
Protein Interaction databases
DIP (DOE-UCLA)Q16821
IntAct (EBI)Q16821
FunCoupENSG00000154415
BioGRIDPPP1R3A
STRING (EMBL)PPP1R3A
ZODIACPPP1R3A
Ontologies - Pathways
QuickGOQ16821
Ontology : AmiGOglycogen metabolic process  integral component of membrane  
Ontology : EGO-EBIglycogen metabolic process  integral component of membrane  
Pathways : KEGGInsulin signaling pathway   
NDEx NetworkPPP1R3A
Atlas of Cancer Signalling NetworkPPP1R3A
Wikipedia pathwaysPPP1R3A
Orthology - Evolution
OrthoDB5506
GeneTree (enSembl)ENSG00000154415
Phylogenetic Trees/Animal Genes : TreeFamPPP1R3A
HOVERGENQ16821
HOGENOMQ16821
Homologs : HomoloGenePPP1R3A
Homology/Alignments : Family Browser (UCSC)PPP1R3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP1R3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP1R3A
dbVarPPP1R3A
ClinVarPPP1R3A
1000_GenomesPPP1R3A 
Exome Variant ServerPPP1R3A
ExAC (Exome Aggregation Consortium)PPP1R3A (select the gene name)
Genetic variants : HAPMAP5506
Genomic Variants (DGV)PPP1R3A [DGVbeta]
DECIPHERPPP1R3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP1R3A 
Mutations
ICGC Data PortalPPP1R3A 
TCGA Data PortalPPP1R3A 
Broad Tumor PortalPPP1R3A
OASIS PortalPPP1R3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPP1R3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPP1R3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch PPP1R3A
DgiDB (Drug Gene Interaction Database)PPP1R3A
DoCM (Curated mutations)PPP1R3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP1R3A (select a term)
intoGenPPP1R3A
Cancer3DPPP1R3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM125853    600917    604367   
Orphanet
MedgenPPP1R3A
Genetic Testing Registry PPP1R3A
NextProtQ16821 [Medical]
TSGene5506
GENETestsPPP1R3A
Huge Navigator PPP1R3A [HugePedia]
snp3D : Map Gene to Disease5506
BioCentury BCIQPPP1R3A
ClinGenPPP1R3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5506
Chemical/Pharm GKB GenePA33651
Clinical trialPPP1R3A
Miscellaneous
canSAR (ICR)PPP1R3A (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP1R3A
EVEXPPP1R3A
GoPubMedPPP1R3A
iHOPPPP1R3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:32:23 CEST 2017

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