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PPP1R3F (protein phosphatase 1 regulatory subunit 3F)

Identity

Alias (NCBI)HB2E
LL0XNC01-7P3.1
R3F
HGNC (Hugo) PPP1R3F
HGNC Alias symbHb2E
HGNC Previous nameprotein phosphatase 1, regulatory (inhibitor) subunit 3F
 protein phosphatase 1, regulatory subunit 3F
LocusID (NCBI) 89801
Atlas_Id 47284
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49269793 and ends at 49288088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ITGA3 (17q21.33) / PPP1R3F (Xp11.23)PPP1R3F (Xp11.23) / CCDC120 (Xp11.23)PPP1R3F (Xp11.23) / PPP1R3F (Xp11.23)
PPP1R3F Xp11.23 / CCDC120 Xp11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  PPP1R3F/CCDC120 (Xp11)


External links

Nomenclature
HGNC (Hugo)PPP1R3F   14944
Cards
Entrez_Gene (NCBI)PPP1R3F  89801  protein phosphatase 1 regulatory subunit 3F
AliasesHB2E; LL0XNC01-7P3.1; R3F
GeneCards (Weizmann)PPP1R3F
Ensembl hg19 (Hinxton)ENSG00000049769 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000049769 [Gene_View]  ENSG00000049769 [Sequence]  chrX:49269793-49288088 [Contig_View]  PPP1R3F [Vega]
ICGC DataPortalENSG00000049769
TCGA cBioPortalPPP1R3F
AceView (NCBI)PPP1R3F
Genatlas (Paris)PPP1R3F
WikiGenes89801
SOURCE (Princeton)PPP1R3F
Genetics Home Reference (NIH)PPP1R3F
Genomic and cartography
GoldenPath hg38 (UCSC)PPP1R3F  -     chrX:49269793-49288088 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP1R3F  -     Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPathPPP1R3F - Xp11.23 [CytoView hg19]  PPP1R3F - Xp11.23 [CytoView hg38]
ImmunoBaseENSG00000049769
genome Data Viewer NCBIPPP1R3F [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI694535 AI699647 AK023038 AK056297 AK056909
RefSeq transcript (Entrez)NM_001184745 NM_033215
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP1R3F
Alternative Splicing GalleryENSG00000049769
Gene ExpressionPPP1R3F [ NCBI-GEO ]   PPP1R3F [ EBI - ARRAY_EXPRESS ]   PPP1R3F [ SEEK ]   PPP1R3F [ MEM ]
Gene Expression Viewer (FireBrowse)PPP1R3F [ Firebrowse - Broad ]
GenevisibleExpression of PPP1R3F in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89801
GTEX Portal (Tissue expression)PPP1R3F
Human Protein AtlasENSG00000049769-PPP1R3F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSY5
Splice isoforms : SwissVarQ6ZSY5
PhosPhoSitePlusQ6ZSY5
Domaine pattern : Prosite (Expaxy)CBM21 (PS51159)   
Domains : Interpro (EBI)CBM21_dom   
Domain families : Pfam (Sanger)CBM_21 (PF03370)   
Domain families : Pfam (NCBI)pfam03370   
Conserved Domain (NCBI)PPP1R3F
DMDM Disease mutations89801
Blocks (Seattle)PPP1R3F
SuperfamilyQ6ZSY5
Human Protein Atlas [tissue]ENSG00000049769-PPP1R3F [tissue]
Peptide AtlasQ6ZSY5
HPRD15170
IPIIPI00374568   IPI00940943   IPI00945669   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSY5
IntAct (EBI)Q6ZSY5
FunCoupENSG00000049769
BioGRIDPPP1R3F
STRING (EMBL)PPP1R3F
ZODIACPPP1R3F
Ontologies - Pathways
QuickGOQ6ZSY5
Ontology : AmiGOprotein phosphatase type 1 complex  regulation of glycogen biosynthetic process  regulation of glycogen biosynthetic process  protein phosphatase 1 binding  membrane  integral component of membrane  protein phosphatase binding  regulation of glycogen (starch) synthase activity  glycogen binding  glycogen binding  
Ontology : EGO-EBIprotein phosphatase type 1 complex  regulation of glycogen biosynthetic process  regulation of glycogen biosynthetic process  protein phosphatase 1 binding  membrane  integral component of membrane  protein phosphatase binding  regulation of glycogen (starch) synthase activity  glycogen binding  glycogen binding  
Pathways : KEGGInsulin signaling pathway   
NDEx NetworkPPP1R3F
Atlas of Cancer Signalling NetworkPPP1R3F
Wikipedia pathwaysPPP1R3F
Orthology - Evolution
OrthoDB89801
GeneTree (enSembl)ENSG00000049769
Phylogenetic Trees/Animal Genes : TreeFamPPP1R3F
HOGENOMQ6ZSY5
Homologs : HomoloGenePPP1R3F
Homology/Alignments : Family Browser (UCSC)PPP1R3F
Gene fusions - Rearrangements
Fusion : MitelmanPPP1R3F/CCDC120 [Xp11.23/Xp11.23]  
Fusion PortalPPP1R3F Xp11.23 CCDC120 Xp11.23 LUAD
Fusion : QuiverPPP1R3F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP1R3F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP1R3F
dbVarPPP1R3F
ClinVarPPP1R3F
MonarchPPP1R3F
1000_GenomesPPP1R3F 
Exome Variant ServerPPP1R3F
GNOMAD BrowserENSG00000049769
Varsome BrowserPPP1R3F
Genetic variants : HAPMAP89801
Genomic Variants (DGV)PPP1R3F [DGVbeta]
DECIPHERPPP1R3F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP1R3F 
Mutations
ICGC Data PortalPPP1R3F 
TCGA Data PortalPPP1R3F 
Broad Tumor PortalPPP1R3F
OASIS PortalPPP1R3F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPP1R3F  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPPP1R3F
Mutations and Diseases : HGMDPPP1R3F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PPP1R3F
DgiDB (Drug Gene Interaction Database)PPP1R3F
DoCM (Curated mutations)PPP1R3F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP1R3F (select a term)
intoGenPPP1R3F
Cancer3DPPP1R3F(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPPP1R3F
MedgenPPP1R3F
Genetic Testing Registry PPP1R3F
NextProtQ6ZSY5 [Medical]
TSGene89801
GENETestsPPP1R3F
Target ValidationPPP1R3F
Huge Navigator PPP1R3F [HugePedia]
snp3D : Map Gene to Disease89801
BioCentury BCIQPPP1R3F
ClinGenPPP1R3F
Clinical trials, drugs, therapy
Protein Interactions : CTD89801
Pharm GKB GenePA33656
Clinical trialPPP1R3F
Miscellaneous
canSAR (ICR)PPP1R3F (select the gene name)
HarmonizomePPP1R3F
DataMed IndexPPP1R3F
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP1R3F
EVEXPPP1R3F
GoPubMedPPP1R3F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:27:54 CEST 2020

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