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PPP1R3G (protein phosphatase 1 regulatory subunit 3G)

Identity

Alias_namesprotein phosphatase 1, regulatory (inhibitor) subunit 3G
protein phosphatase 1, regulatory subunit 3G
Other alias-
HGNC (Hugo) PPP1R3G
LocusID (NCBI) 648791
Atlas_Id 46845
Location 6p25.1  [Link to chromosome band 6p25]
Location_base_pair Starts at 5085486 and ends at 5087221 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM50B (6p25.2) / PPP1R3G (6p25.1)PPP1R3G (6p25.1) / FAM50B (6p25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  Lung: Translocations in Squamous Cell Carcinoma
PPP1R3G/FAM50B (6p25)
FAM50B/PPP1R3G (6p25)


External links

Nomenclature
HGNC (Hugo)PPP1R3G   14945
Cards
Entrez_Gene (NCBI)PPP1R3G  648791  protein phosphatase 1 regulatory subunit 3G
Aliases
GeneCards (Weizmann)PPP1R3G
Ensembl hg19 (Hinxton)ENSG00000219607 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000219607 [Gene_View]  ENSG00000219607 [Sequence]  chr6:5085486-5087221 [Contig_View]  PPP1R3G [Vega]
ICGC DataPortalENSG00000219607
TCGA cBioPortalPPP1R3G
AceView (NCBI)PPP1R3G
Genatlas (Paris)PPP1R3G
WikiGenes648791
SOURCE (Princeton)PPP1R3G
Genetics Home Reference (NIH)PPP1R3G
Genomic and cartography
GoldenPath hg38 (UCSC)PPP1R3G  -     chr6:5085486-5087221 +  6p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP1R3G  -     6p25.1   [Description]    (hg19-Feb_2009)
EnsemblPPP1R3G - 6p25.1 [CytoView hg19]  PPP1R3G - 6p25.1 [CytoView hg38]
Mapping of homologs : NCBIPPP1R3G [Mapview hg19]  PPP1R3G [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI089064
RefSeq transcript (Entrez)NM_001145115
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP1R3G
Cluster EST : UnigeneHs.653089 [ NCBI ]
CGAP (NCI)Hs.653089
Alternative Splicing GalleryENSG00000219607
Gene ExpressionPPP1R3G [ NCBI-GEO ]   PPP1R3G [ EBI - ARRAY_EXPRESS ]   PPP1R3G [ SEEK ]   PPP1R3G [ MEM ]
Gene Expression Viewer (FireBrowse)PPP1R3G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)648791
GTEX Portal (Tissue expression)PPP1R3G
Human Protein AtlasENSG00000219607-PPP1R3G [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB7ZBB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB7ZBB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB7ZBB8
Splice isoforms : SwissVarB7ZBB8
PhosPhoSitePlusB7ZBB8
Domaine pattern : Prosite (Expaxy)CBM21 (PS51159)   
Domains : Interpro (EBI)CBM21_dom    CBM21_dom_sf   
Domain families : Pfam (Sanger)CBM_21 (PF03370)   
Domain families : Pfam (NCBI)pfam03370   
Conserved Domain (NCBI)PPP1R3G
DMDM Disease mutations648791
Blocks (Seattle)PPP1R3G
SuperfamilyB7ZBB8
Human Protein Atlas [tissue]ENSG00000219607-PPP1R3G [tissue]
Peptide AtlasB7ZBB8
IPIIPI00887016   
Protein Interaction databases
DIP (DOE-UCLA)B7ZBB8
IntAct (EBI)B7ZBB8
FunCoupENSG00000219607
BioGRIDPPP1R3G
STRING (EMBL)PPP1R3G
ZODIACPPP1R3G
Ontologies - Pathways
QuickGOB7ZBB8
Ontology : AmiGOcytoplasm  protein phosphatase binding  glucose homeostasis  positive regulation of glycogen biosynthetic process  positive regulation of glycogen (starch) synthase activity  glycogen binding  
Ontology : EGO-EBIcytoplasm  protein phosphatase binding  glucose homeostasis  positive regulation of glycogen biosynthetic process  positive regulation of glycogen (starch) synthase activity  glycogen binding  
NDEx NetworkPPP1R3G
Atlas of Cancer Signalling NetworkPPP1R3G
Wikipedia pathwaysPPP1R3G
Orthology - Evolution
OrthoDB648791
GeneTree (enSembl)ENSG00000219607
Phylogenetic Trees/Animal Genes : TreeFamPPP1R3G
HOVERGENB7ZBB8
HOGENOMB7ZBB8
Homologs : HomoloGenePPP1R3G
Homology/Alignments : Family Browser (UCSC)PPP1R3G
Gene fusions - Rearrangements
Fusion : MitelmanFAM50B/PPP1R3G [6p25.2/6p25.1]  [t(6;6)(p25;p25)]  
Fusion : MitelmanPPP1R3G/FAM50B [6p25.1/6p25.2]  [t(6;6)(p25;p25)]  
Fusion : QuiverPPP1R3G
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP1R3G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP1R3G
dbVarPPP1R3G
ClinVarPPP1R3G
1000_GenomesPPP1R3G 
Exome Variant ServerPPP1R3G
ExAC (Exome Aggregation Consortium)ENSG00000219607
GNOMAD BrowserENSG00000219607
Varsome BrowserPPP1R3G
Genetic variants : HAPMAP648791
Genomic Variants (DGV)PPP1R3G [DGVbeta]
DECIPHERPPP1R3G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP1R3G 
Mutations
ICGC Data PortalPPP1R3G 
TCGA Data PortalPPP1R3G 
Broad Tumor PortalPPP1R3G
OASIS PortalPPP1R3G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPP1R3G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPP1R3G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPP1R3G
DgiDB (Drug Gene Interaction Database)PPP1R3G
DoCM (Curated mutations)PPP1R3G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP1R3G (select a term)
intoGenPPP1R3G
Cancer3DPPP1R3G(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPPP1R3G
MedgenPPP1R3G
Genetic Testing Registry PPP1R3G
NextProtB7ZBB8 [Medical]
TSGene648791
GENETestsPPP1R3G
Target ValidationPPP1R3G
Huge Navigator PPP1R3G [HugePedia]
snp3D : Map Gene to Disease648791
BioCentury BCIQPPP1R3G
ClinGenPPP1R3G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD648791
Chemical/Pharm GKB GenePA33657
Clinical trialPPP1R3G
Miscellaneous
canSAR (ICR)PPP1R3G (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP1R3G
EVEXPPP1R3G
GoPubMedPPP1R3G
iHOPPPP1R3G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:31:47 CET 2018

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