Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PPP2R2B-IT1 (PPP2R2B intronic transcript 1)

Identity

Alias_namesPPP2R2B intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) PPP2R2B-IT1
LocusID (NCBI) 100874361
Atlas_Id 72153
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 146914207 and ends at 146919506 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPP2R2B-IT1   42984
Cards
Entrez_Gene (NCBI)PPP2R2B-IT1  100874361  PPP2R2B intronic transcript 1
Aliases
GeneCards (Weizmann)PPP2R2B-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:146914207-146919506 [Contig_View]  PPP2R2B-IT1 [Vega]
TCGA cBioPortalPPP2R2B-IT1
AceView (NCBI)PPP2R2B-IT1
Genatlas (Paris)PPP2R2B-IT1
WikiGenes100874361
SOURCE (Princeton)PPP2R2B-IT1
Genetics Home Reference (NIH)PPP2R2B-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)PPP2R2B-IT1  -     chr5:146914207-146919506 -  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP2R2B-IT1  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblPPP2R2B-IT1 - 5q32 [CytoView hg19]  PPP2R2B-IT1 - 5q32 [CytoView hg38]
Mapping of homologs : NCBIPPP2R2B-IT1 [Mapview hg19]  PPP2R2B-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX113093
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP2R2B-IT1
Cluster EST : UnigeneHs.193825 [ NCBI ]
CGAP (NCI)Hs.193825
Gene ExpressionPPP2R2B-IT1 [ NCBI-GEO ]   PPP2R2B-IT1 [ EBI - ARRAY_EXPRESS ]   PPP2R2B-IT1 [ SEEK ]   PPP2R2B-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)PPP2R2B-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874361
GTEX Portal (Tissue expression)PPP2R2B-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PPP2R2B-IT1
DMDM Disease mutations100874361
Blocks (Seattle)PPP2R2B-IT1
Protein Interaction databases
BioGRIDPPP2R2B-IT1
STRING (EMBL)PPP2R2B-IT1
ZODIACPPP2R2B-IT1
Ontologies - Pathways
Huge Navigator PPP2R2B-IT1 [HugePedia]
snp3D : Map Gene to Disease100874361
BioCentury BCIQPPP2R2B-IT1
ClinGenPPP2R2B-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874361
Clinical trialPPP2R2B-IT1
Miscellaneous
canSAR (ICR)PPP2R2B-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP2R2B-IT1
EVEXPPP2R2B-IT1
GoPubMedPPP2R2B-IT1
iHOPPPP2R2B-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:12:52 CET 2017

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