Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PPP2R5B (protein phosphatase 2 regulatory subunit B'beta)

Identity

Alias (NCBI)B56B
B56beta
PR61B
HGNC (Hugo) PPP2R5B
HGNC Alias symbFLJ35411
B56B
PR61B
B56beta
HGNC Alias namePP2A, B subunit, B' beta isoform
 PP2A, B subunit, B56 beta isoform
 PP2A, B subunit, PR61 beta isoform
 PP2A, B subunit, R5 beta isoform
 serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, beta isoform
HGNC Previous nameprotein phosphatase 2, regulatory subunit B (B56), beta isoform
LocusID (NCBI) 5526
Atlas_Id 41819
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64924689 and ends at 64934475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IGSF11 (3q13.32)::PPP2R5B (11q13.1)NUMA1 (11q13.4)::PPP2R5B (11q13.1)PPP2R5B (11q13.1)::KDM2A (11q13.2)
NUMA1 11q13.4::PPP2R5B 11q13.1PPP2R5B 11q13.1::KDM2A 11q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)PPP2R5B   9310
Cards
Entrez_Gene (NCBI)PPP2R5B    protein phosphatase 2 regulatory subunit B'beta
AliasesB56B; B56beta; PR61B
GeneCards (Weizmann)PPP2R5B
Ensembl hg19 (Hinxton)ENSG00000068971 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068971 [Gene_View]  ENSG00000068971 [Sequence]  chr11:64924689-64934475 [Contig_View]  PPP2R5B [Vega]
ICGC DataPortalENSG00000068971
TCGA cBioPortalPPP2R5B
AceView (NCBI)PPP2R5B
Genatlas (Paris)PPP2R5B
SOURCE (Princeton)PPP2R5B
Genetics Home Reference (NIH)PPP2R5B
Genomic and cartography
GoldenPath hg38 (UCSC)PPP2R5B  -     chr11:64924689-64934475 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP2R5B  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathPPP2R5B - 11q13.1 [CytoView hg19]  PPP2R5B - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000068971
Genome Data Viewer NCBIPPP2R5B [Mapview hg19]  
OMIM601644   
Gene and transcription
Genbank (Entrez)AK092730 BC045619 BE883575 BM665417 L42374
RefSeq transcript (Entrez)NM_006244
Consensus coding sequences : CCDS (NCBI)PPP2R5B
Gene ExpressionPPP2R5B [ NCBI-GEO ]   PPP2R5B [ EBI - ARRAY_EXPRESS ]   PPP2R5B [ SEEK ]   PPP2R5B [ MEM ]
Gene Expression Viewer (FireBrowse)PPP2R5B [ Firebrowse - Broad ]
GenevisibleExpression of PPP2R5B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5526
GTEX Portal (Tissue expression)PPP2R5B
Human Protein AtlasENSG00000068971-PPP2R5B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15173   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15173  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15173
PhosPhoSitePlusQ15173
Domains : Interpro (EBI)ARM-like    ARM-type_fold    PP2A_B56   
Domain families : Pfam (Sanger)B56 (PF01603)   
Domain families : Pfam (NCBI)pfam01603   
Conserved Domain (NCBI)PPP2R5B
SuperfamilyQ15173
AlphaFold pdb e-kbQ15173   
Human Protein Atlas [tissue]ENSG00000068971-PPP2R5B [tissue]
HPRD09038
Protein Interaction databases
DIP (DOE-UCLA)Q15173
IntAct (EBI)Q15173
BioGRIDPPP2R5B
STRING (EMBL)PPP2R5B
ZODIACPPP2R5B
Ontologies - Pathways
QuickGOQ15173
Ontology : AmiGOprotein phosphatase type 2A complex  protein binding  nucleus  cytoplasm  cytosol  cytosol  protein dephosphorylation  signal transduction  regulation of signaling receptor activity  positive regulation of neuron projection development  protein phosphatase regulator activity  positive regulation of protein-containing complex assembly  regulation of protein autophosphorylation  positive regulation of transcription by RNA polymerase II  regulation of peptidyl-tyrosine phosphorylation  regulation of catalytic activity  positive regulation of DNA-binding transcription factor activity  positive regulation of neurotrophin TRK receptor signaling pathway  negative regulation of G0 to G1 transition  cellular response to growth factor stimulus  protein phosphatase activator activity  
Ontology : EGO-EBIprotein phosphatase type 2A complex  protein binding  nucleus  cytoplasm  cytosol  cytosol  protein dephosphorylation  signal transduction  regulation of signaling receptor activity  positive regulation of neuron projection development  protein phosphatase regulator activity  positive regulation of protein-containing complex assembly  regulation of protein autophosphorylation  positive regulation of transcription by RNA polymerase II  regulation of peptidyl-tyrosine phosphorylation  regulation of catalytic activity  positive regulation of DNA-binding transcription factor activity  positive regulation of neurotrophin TRK receptor signaling pathway  negative regulation of G0 to G1 transition  cellular response to growth factor stimulus  protein phosphatase activator activity  
Pathways : KEGGKEGG_OOCYTE_MEIOSIS    KEGG_WNT_SIGNALING   
NDEx NetworkPPP2R5B
Atlas of Cancer Signalling NetworkPPP2R5B
Wikipedia pathwaysPPP2R5B
Orthology - Evolution
OrthoDB5526
GeneTree (enSembl)ENSG00000068971
Phylogenetic Trees/Animal Genes : TreeFamPPP2R5B
Homologs : HomoloGenePPP2R5B
Homology/Alignments : Family Browser (UCSC)PPP2R5B
Gene fusions - Rearrangements
Fusion : MitelmanNUMA1::PPP2R5B [11q13.4/11q13.1]  
Fusion : MitelmanPPP2R5B::KDM2A [11q13.1/11q13.2]  
Fusion : QuiverPPP2R5B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP2R5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP2R5B
dbVarPPP2R5B
ClinVarPPP2R5B
MonarchPPP2R5B
1000_GenomesPPP2R5B 
Exome Variant ServerPPP2R5B
GNOMAD BrowserENSG00000068971
Varsome BrowserPPP2R5B
ACMGPPP2R5B variants
VarityQ15173
Genomic Variants (DGV)PPP2R5B [DGVbeta]
DECIPHERPPP2R5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP2R5B 
Mutations
ICGC Data PortalPPP2R5B 
TCGA Data PortalPPP2R5B 
Broad Tumor PortalPPP2R5B
OASIS PortalPPP2R5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPP2R5B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPPP2R5B
Mutations and Diseases : HGMDPPP2R5B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPPP2R5B
DgiDB (Drug Gene Interaction Database)PPP2R5B
DoCM (Curated mutations)PPP2R5B
CIViC (Clinical Interpretations of Variants in Cancer)PPP2R5B
Cancer3DPPP2R5B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601644   
Orphanet
DisGeNETPPP2R5B
MedgenPPP2R5B
Genetic Testing Registry PPP2R5B
NextProtQ15173 [Medical]
GENETestsPPP2R5B
Target ValidationPPP2R5B
Huge Navigator PPP2R5B [HugePedia]
ClinGenPPP2R5B
Clinical trials, drugs, therapy
MyCancerGenomePPP2R5B
Protein Interactions : CTDPPP2R5B
Pharm GKB GenePA33673
PharosQ15173
Clinical trialPPP2R5B
Miscellaneous
canSAR (ICR)PPP2R5B
HarmonizomePPP2R5B
ARCHS4PPP2R5B
DataMed IndexPPP2R5B
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPPP2R5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:53:32 CET 2022
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