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PPP3R2 (protein phosphatase 3 regulatory subunit B, beta)

Identity

Alias_namesprotein phosphatase 3 (formerly 2B), regulatory subunit B (19kD), beta isoform (calcineurin B, type II)
protein phosphatase 3 (formerly 2B), regulatory subunit B, 19kDa, beta isoform (calcineurin B, type II)
protein phosphatase 3 (formerly 2B), regulatory subunit B, beta isoform
protein phosphatase 3, regulatory subunit B, beta
Alias_symbol (synonym)PPP3RL
Other alias
HGNC (Hugo) PPP3R2
LocusID (NCBI) 5535
Atlas_Id 47133
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 101591615 and ends at 101595001 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPP3R2   9318
Cards
Entrez_Gene (NCBI)PPP3R2  5535  protein phosphatase 3 regulatory subunit B, beta
AliasesPPP3RL
GeneCards (Weizmann)PPP3R2
Ensembl hg19 (Hinxton)ENSG00000188386 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188386 [Gene_View]  chr9:101591615-101595001 [Contig_View]  PPP3R2 [Vega]
ICGC DataPortalENSG00000188386
TCGA cBioPortalPPP3R2
AceView (NCBI)PPP3R2
Genatlas (Paris)PPP3R2
WikiGenes5535
SOURCE (Princeton)PPP3R2
Genetics Home Reference (NIH)PPP3R2
Genomic and cartography
GoldenPath hg38 (UCSC)PPP3R2  -     chr9:101591615-101595001 -  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP3R2  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblPPP3R2 - 9q31.1 [CytoView hg19]  PPP3R2 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIPPP3R2 [Mapview hg19]  PPP3R2 [Mapview hg38]
OMIM613821   
Gene and transcription
Genbank (Entrez)AF085237 AF145026 AF400667 AK057524 BC030595
RefSeq transcript (Entrez)NM_147180
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP3R2
Cluster EST : UnigeneHs.151167 [ NCBI ]
CGAP (NCI)Hs.151167
Alternative Splicing GalleryENSG00000188386
Gene ExpressionPPP3R2 [ NCBI-GEO ]   PPP3R2 [ EBI - ARRAY_EXPRESS ]   PPP3R2 [ SEEK ]   PPP3R2 [ MEM ]
Gene Expression Viewer (FireBrowse)PPP3R2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5535
GTEX Portal (Tissue expression)PPP3R2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LZ3
Splice isoforms : SwissVarQ96LZ3
PhosPhoSitePlusQ96LZ3
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)PPP3R2
DMDM Disease mutations5535
Blocks (Seattle)PPP3R2
SuperfamilyQ96LZ3
Human Protein AtlasENSG00000188386
Peptide AtlasQ96LZ3
HPRD10164
IPIIPI01011547   IPI00065432   
Protein Interaction databases
DIP (DOE-UCLA)Q96LZ3
IntAct (EBI)Q96LZ3
FunCoupENSG00000188386
BioGRIDPPP3R2
STRING (EMBL)PPP3R2
ZODIACPPP3R2
Ontologies - Pathways
QuickGOQ96LZ3
Ontology : AmiGOcalcium ion binding  protein binding  
Ontology : EGO-EBIcalcium ion binding  protein binding  
Pathways : KEGG   
NDEx NetworkPPP3R2
Atlas of Cancer Signalling NetworkPPP3R2
Wikipedia pathwaysPPP3R2
Orthology - Evolution
OrthoDB5535
GeneTree (enSembl)ENSG00000188386
Phylogenetic Trees/Animal Genes : TreeFamPPP3R2
HOVERGENQ96LZ3
HOGENOMQ96LZ3
Homologs : HomoloGenePPP3R2
Homology/Alignments : Family Browser (UCSC)PPP3R2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP3R2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP3R2
dbVarPPP3R2
ClinVarPPP3R2
1000_GenomesPPP3R2 
Exome Variant ServerPPP3R2
ExAC (Exome Aggregation Consortium)PPP3R2 (select the gene name)
Genetic variants : HAPMAP5535
Genomic Variants (DGV)PPP3R2 [DGVbeta]
DECIPHERPPP3R2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP3R2 
Mutations
ICGC Data PortalPPP3R2 
TCGA Data PortalPPP3R2 
Broad Tumor PortalPPP3R2
OASIS PortalPPP3R2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPP3R2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPP3R2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPP3R2
DgiDB (Drug Gene Interaction Database)PPP3R2
DoCM (Curated mutations)PPP3R2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP3R2 (select a term)
intoGenPPP3R2
Cancer3DPPP3R2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613821   
Orphanet
MedgenPPP3R2
Genetic Testing Registry PPP3R2
NextProtQ96LZ3 [Medical]
TSGene5535
GENETestsPPP3R2
Target ValidationPPP3R2
Huge Navigator PPP3R2 [HugePedia]
snp3D : Map Gene to Disease5535
BioCentury BCIQPPP3R2
ClinGenPPP3R2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5535
Chemical/Pharm GKB GenePA33682
Clinical trialPPP3R2
Miscellaneous
canSAR (ICR)PPP3R2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP3R2
EVEXPPP3R2
GoPubMedPPP3R2
iHOPPPP3R2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:26:10 CEST 2017

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