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PPP4R1L (protein phosphatase 4 regulatory subunit 1 like (pseudogene))

Identity

Alias (NCBI)C20orf192
PPP4R1P1
PRO1085
HGNC (Hugo) PPP4R1L
HGNC Alias symbbA196N14.4
bA196N14.5
PPP4R1P1
HGNC Previous nameC20orf192
HGNC Previous nameprotein phosphatase 4, regulatory subunit 1-like
 protein phosphatase 4, regulatory subunit 1-like (pseudogene)
LocusID (NCBI) 55370
Atlas_Id 46751
Location 20q13.32  [Link to chromosome band 20q13]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCA5 (17q24.3) / PPP4R1L (20q13.32)FAM219A (9p13.3) / PPP4R1L (20q13.32)PPP4R1L (20q13.32) / NCOA6 (20q11.22)
PPP4R1L 20q13.32 / NCOA6 20q11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PPP4R1L   15755
Cards
Entrez_Gene (NCBI)PPP4R1L    protein phosphatase 4 regulatory subunit 1 like (pseudogene)
AliasesC20orf192; PPP4R1P1; PRO1085
GeneCards (Weizmann)PPP4R1L
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  PPP4R1L [Vega]
TCGA cBioPortalPPP4R1L
AceView (NCBI)PPP4R1L
Genatlas (Paris)PPP4R1L
SOURCE (Princeton)PPP4R1L
Genetics Home Reference (NIH)PPP4R1L
Genomic and cartography
GoldenPath hg38 (UCSC)PPP4R1L  -  
GoldenPath hg19 (UCSC)PPP4R1L  -  
GoldenPathPPP4R1L - [CytoView hg19]  PPP4R1L - [CytoView hg38]
Genome Data Viewer NCBIPPP4R1L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK057583 AK299330 AL833409 BC100979 BC100980
RefSeq transcript (Entrez)NM_018498
Consensus coding sequences : CCDS (NCBI)PPP4R1L
Gene ExpressionPPP4R1L [ NCBI-GEO ]   PPP4R1L [ EBI - ARRAY_EXPRESS ]   PPP4R1L [ SEEK ]   PPP4R1L [ MEM ]
Gene Expression Viewer (FireBrowse)PPP4R1L [ Firebrowse - Broad ]
GenevisibleExpression of PPP4R1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55370
GTEX Portal (Tissue expression)PPP4R1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1A2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1A2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1A2
PhosPhoSitePlusQ9P1A2
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    HEAT_type_2    PPP4R1L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PPP4R1L
SuperfamilyQ9P1A2
AlphaFold pdb e-kbQ9P1A2   
HPRD17895
Protein Interaction databases
DIP (DOE-UCLA)Q9P1A2
IntAct (EBI)Q9P1A2
BioGRIDPPP4R1L
STRING (EMBL)PPP4R1L
ZODIACPPP4R1L
Ontologies - Pathways
QuickGOQ9P1A2
Ontology : AmiGOmolecular_function  protein binding  cellular_component  protein dephosphorylation  biological_process  protein phosphatase regulator activity  regulation of phosphoprotein phosphatase activity  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  protein dephosphorylation  biological_process  protein phosphatase regulator activity  regulation of phosphoprotein phosphatase activity  
NDEx NetworkPPP4R1L
Atlas of Cancer Signalling NetworkPPP4R1L
Wikipedia pathwaysPPP4R1L
Orthology - Evolution
OrthoDB55370
Phylogenetic Trees/Animal Genes : TreeFamPPP4R1L
Homologs : HomoloGenePPP4R1L
Homology/Alignments : Family Browser (UCSC)PPP4R1L
Gene fusions - Rearrangements
Fusion : MitelmanABCA5/PPP4R1L [17q24.3/20q13.32]  
Fusion : MitelmanPPP4R1L/NCOA6 [20q13.32/20q11.22]  
Fusion : QuiverPPP4R1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP4R1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP4R1L
dbVarPPP4R1L
ClinVarPPP4R1L
MonarchPPP4R1L
1000_GenomesPPP4R1L 
Exome Variant ServerPPP4R1L
Varsome BrowserPPP4R1L
ACMGPPP4R1L variants
VarityQ9P1A2
Genomic Variants (DGV)PPP4R1L [DGVbeta]
DECIPHERPPP4R1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP4R1L 
Mutations
ICGC Data PortalPPP4R1L 
TCGA Data PortalPPP4R1L 
Broad Tumor PortalPPP4R1L
OASIS PortalPPP4R1L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPP4R1L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPPP4R1L
DgiDB (Drug Gene Interaction Database)PPP4R1L
DoCM (Curated mutations)PPP4R1L
CIViC (Clinical Interpretations of Variants in Cancer)PPP4R1L
Cancer3DPPP4R1L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPPP4R1L
MedgenPPP4R1L
Genetic Testing Registry PPP4R1L
NextProtQ9P1A2 [Medical]
GENETestsPPP4R1L
Target ValidationPPP4R1L
Huge Navigator PPP4R1L [HugePedia]
ClinGenPPP4R1L
Clinical trials, drugs, therapy
MyCancerGenomePPP4R1L
Protein Interactions : CTDPPP4R1L
Pharm GKB GenePA33685
PharosQ9P1A2
Clinical trialPPP4R1L
Miscellaneous
canSAR (ICR)PPP4R1L
HarmonizomePPP4R1L
DataMed IndexPPP4R1L
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPPP4R1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:26:34 CEST 2021

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