Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PPP4R1L (protein phosphatase 4 regulatory subunit 1 like (pseudogene))

Identity

Alias_namesC20orf192
protein phosphatase 4, regulatory subunit 1-like
protein phosphatase 4, regulatory subunit 1-like (pseudogene)
Alias_symbol (synonym)bA196N14.4
bA196N14.5
PPP4R1P1
Other aliasPRO1085
HGNC (Hugo) PPP4R1L
LocusID (NCBI) 55370
Atlas_Id 46751
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 58237919 and ends at 58309439 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCA5 (17q24.3) / PPP4R1L (20q13.32)FAM219A (9p13.3) / PPP4R1L (20q13.32)PPP4R1L (20q13.32) / NCOA6 (20q11.22)
PPP4R1L 20q13.32 / NCOA6 20q11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPP4R1L   15755
Cards
Entrez_Gene (NCBI)PPP4R1L  55370  protein phosphatase 4 regulatory subunit 1 like (pseudogene)
AliasesC20orf192; PPP4R1P1; PRO1085
GeneCards (Weizmann)PPP4R1L
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:58237919-58309439 [Contig_View]  PPP4R1L [Vega]
TCGA cBioPortalPPP4R1L
AceView (NCBI)PPP4R1L
Genatlas (Paris)PPP4R1L
WikiGenes55370
SOURCE (Princeton)PPP4R1L
Genetics Home Reference (NIH)PPP4R1L
Genomic and cartography
GoldenPath hg38 (UCSC)PPP4R1L  -     chr20:58237919-58309439 -  20q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP4R1L  -     20q13.32   [Description]    (hg19-Feb_2009)
EnsemblPPP4R1L - 20q13.32 [CytoView hg19]  PPP4R1L - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBIPPP4R1L [Mapview hg19]  PPP4R1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057583 AK299330 AL833409 BC100979 BC100980
RefSeq transcript (Entrez)NM_018498
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP4R1L
Cluster EST : UnigeneHs.473179 [ NCBI ]
CGAP (NCI)Hs.473179
Gene ExpressionPPP4R1L [ NCBI-GEO ]   PPP4R1L [ EBI - ARRAY_EXPRESS ]   PPP4R1L [ SEEK ]   PPP4R1L [ MEM ]
Gene Expression Viewer (FireBrowse)PPP4R1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55370
GTEX Portal (Tissue expression)PPP4R1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1A2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1A2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1A2
Splice isoforms : SwissVarQ9P1A2
PhosPhoSitePlusQ9P1A2
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    HEAT_type_2    PPP4R1L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PPP4R1L
DMDM Disease mutations55370
Blocks (Seattle)PPP4R1L
SuperfamilyQ9P1A2
Peptide AtlasQ9P1A2
HPRD17895
IPIIPI00402419   IPI00186064   IPI00065410   IPI01021807   IPI00830131   IPI00941222   IPI01014771   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1A2
IntAct (EBI)Q9P1A2
BioGRIDPPP4R1L
STRING (EMBL)PPP4R1L
ZODIACPPP4R1L
Ontologies - Pathways
QuickGOQ9P1A2
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkPPP4R1L
Atlas of Cancer Signalling NetworkPPP4R1L
Wikipedia pathwaysPPP4R1L
Orthology - Evolution
OrthoDB55370
Phylogenetic Trees/Animal Genes : TreeFamPPP4R1L
HOVERGENQ9P1A2
HOGENOMQ9P1A2
Homologs : HomoloGenePPP4R1L
Homology/Alignments : Family Browser (UCSC)PPP4R1L
Gene fusions - Rearrangements
Fusion : MitelmanABCA5/PPP4R1L [17q24.3/20q13.32]  [t(17;20)(q24;q13)]  
Fusion : MitelmanPPP4R1L/NCOA6 [20q13.32/20q11.22]  [t(20;20)(q11;q13)]  
Fusion: TCGA_MDACCPPP4R1L 20q13.32 NCOA6 20q11.22 BRCA
Tumor Fusion PortalPPP4R1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP4R1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP4R1L
dbVarPPP4R1L
ClinVarPPP4R1L
1000_GenomesPPP4R1L 
Exome Variant ServerPPP4R1L
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP55370
Genomic Variants (DGV)PPP4R1L [DGVbeta]
DECIPHERPPP4R1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP4R1L 
Mutations
ICGC Data PortalPPP4R1L 
TCGA Data PortalPPP4R1L 
Broad Tumor PortalPPP4R1L
OASIS PortalPPP4R1L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPP4R1L
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch PPP4R1L
DgiDB (Drug Gene Interaction Database)PPP4R1L
DoCM (Curated mutations)PPP4R1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP4R1L (select a term)
intoGenPPP4R1L
Cancer3DPPP4R1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPPP4R1L
MedgenPPP4R1L
Genetic Testing Registry PPP4R1L
NextProtQ9P1A2 [Medical]
TSGene55370
GENETestsPPP4R1L
Target ValidationPPP4R1L
Huge Navigator PPP4R1L [HugePedia]
snp3D : Map Gene to Disease55370
BioCentury BCIQPPP4R1L
ClinGenPPP4R1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55370
Chemical/Pharm GKB GenePA33685
Clinical trialPPP4R1L
Miscellaneous
canSAR (ICR)PPP4R1L (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP4R1L
EVEXPPP4R1L
GoPubMedPPP4R1L
iHOPPPP4R1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:30:03 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.