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PPP4R3C (protein phosphatase 4 regulatory subunit 3C)

Identity

Alias_namesSMEK3P
PPP4R3CP
SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene
protein phosphatase 4, regulatory subunit 3C, pseudogene
Alias_symbol (synonym)FLJ32867
FLFL3P
smk1
Other alias
HGNC (Hugo) PPP4R3C
LocusID (NCBI) 139420
Atlas_Id 79761
Location Xp21.3  [Link to chromosome band Xp21]
Location_base_pair Starts at 27460211 and ends at 27463341 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PPP4R3C   33146
Cards
Entrez_Gene (NCBI)PPP4R3C  139420  protein phosphatase 4 regulatory subunit 3C
AliasesFLFL3P; PPP4R3CP; SMEK3P; smk1
GeneCards (Weizmann)PPP4R3C
Ensembl hg19 (Hinxton)ENSG00000224960 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224960 [Gene_View]  chrX:27460211-27463341 [Contig_View]  PPP4R3C [Vega]
ICGC DataPortalENSG00000224960
TCGA cBioPortalPPP4R3C
AceView (NCBI)PPP4R3C
Genatlas (Paris)PPP4R3C
WikiGenes139420
SOURCE (Princeton)PPP4R3C
Genetics Home Reference (NIH)PPP4R3C
Genomic and cartography
GoldenPath hg38 (UCSC)PPP4R3C  -     chrX:27460211-27463341 -  Xp21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP4R3C  -     Xp21.3   [Description]    (hg19-Feb_2009)
EnsemblPPP4R3C - Xp21.3 [CytoView hg19]  PPP4R3C - Xp21.3 [CytoView hg38]
Mapping of homologs : NCBIPPP4R3C [Mapview hg19]  PPP4R3C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057429 AK131475 DB022709 DB521738
RefSeq transcript (Entrez)NM_207319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP4R3C
Cluster EST : UnigeneHs.641864 [ NCBI ]
CGAP (NCI)Hs.641864
Alternative Splicing GalleryENSG00000224960
Gene ExpressionPPP4R3C [ NCBI-GEO ]   PPP4R3C [ EBI - ARRAY_EXPRESS ]   PPP4R3C [ SEEK ]   PPP4R3C [ MEM ]
Gene Expression Viewer (FireBrowse)PPP4R3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139420
GTEX Portal (Tissue expression)PPP4R3C
Human Protein AtlasENSG00000224960-PPP4R3C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMV5
Splice isoforms : SwissVarQ6ZMV5
PhosPhoSitePlusQ6ZMV5
Domains : Interpro (EBI)ARM-type_fold    DUF625    PH_dom-like   
Domain families : Pfam (Sanger)SMK-1 (PF04802)   
Domain families : Pfam (NCBI)pfam04802   
Conserved Domain (NCBI)PPP4R3C
DMDM Disease mutations139420
Blocks (Seattle)PPP4R3C
SuperfamilyQ6ZMV5
Human Protein Atlas [tissue]ENSG00000224960-PPP4R3C [tissue]
Peptide AtlasQ6ZMV5
IPIIPI00900377   IPI00410731   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMV5
IntAct (EBI)Q6ZMV5
FunCoupENSG00000224960
BioGRIDPPP4R3C
STRING (EMBL)PPP4R3C
ZODIACPPP4R3C
Ontologies - Pathways
QuickGOQ6ZMV5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPPP4R3C
Atlas of Cancer Signalling NetworkPPP4R3C
Wikipedia pathwaysPPP4R3C
Orthology - Evolution
OrthoDB139420
GeneTree (enSembl)ENSG00000224960
Phylogenetic Trees/Animal Genes : TreeFamPPP4R3C
HOVERGENQ6ZMV5
HOGENOMQ6ZMV5
Homologs : HomoloGenePPP4R3C
Homology/Alignments : Family Browser (UCSC)PPP4R3C
Gene fusions - Rearrangements
Tumor Fusion PortalPPP4R3C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP4R3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP4R3C
dbVarPPP4R3C
ClinVarPPP4R3C
1000_GenomesPPP4R3C 
Exome Variant ServerPPP4R3C
ExAC (Exome Aggregation Consortium)ENSG00000224960
GNOMAD BrowserENSG00000224960
Genetic variants : HAPMAP139420
Genomic Variants (DGV)PPP4R3C [DGVbeta]
DECIPHERPPP4R3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP4R3C 
Mutations
ICGC Data PortalPPP4R3C 
TCGA Data PortalPPP4R3C 
Broad Tumor PortalPPP4R3C
OASIS PortalPPP4R3C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPP4R3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPP4R3C
DgiDB (Drug Gene Interaction Database)PPP4R3C
DoCM (Curated mutations)PPP4R3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP4R3C (select a term)
intoGenPPP4R3C
Cancer3DPP6R3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPPP4R3C
MedgenPPP4R3C
Genetic Testing Registry PPP4R3C
NextProtQ6ZMV5 [Medical]
TSGene139420
GENETestsPPP4R3C
Target ValidationPPP4R3C
Huge Navigator PPP4R3C [HugePedia]
snp3D : Map Gene to Disease139420
BioCentury BCIQPPP4R3C
ClinGenPPP4R3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139420
Clinical trialPPP4R3C
Miscellaneous
canSAR (ICR)PPP4R3C (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP4R3C
EVEXPPP4R3C
GoPubMedPPP4R3C
iHOPPPP4R3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:25 CET 2017

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