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PPP4R3CP (protein phosphatase 4 regulatory subunit 3C, pseudogene)

Identity

Alias_namesSMEK3P
SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene
protein phosphatase 4, regulatory subunit 3C, pseudogene
Alias_symbol (synonym)FLJ32867
FLFL3P
smk1
Other alias
HGNC (Hugo) PPP4R3CP
LocusID (NCBI) 139420
Atlas_Id 77803
Location Xp21.3  [Link to chromosome band Xp21]
Location_base_pair Starts at 27460211 and ends at 27462416 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPP4R3CP   33146
Cards
Entrez_Gene (NCBI)PPP4R3CP  139420  protein phosphatase 4 regulatory subunit 3C, pseudogene
AliasesFLFL3P; SMEK3P; smk1
GeneCards (Weizmann)PPP4R3CP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:27460211-27462416 [Contig_View]  PPP4R3CP [Vega]
TCGA cBioPortalPPP4R3CP
AceView (NCBI)PPP4R3CP
Genatlas (Paris)PPP4R3CP
WikiGenes139420
SOURCE (Princeton)PPP4R3CP
Genetics Home Reference (NIH)PPP4R3CP
Genomic and cartography
GoldenPath hg38 (UCSC)PPP4R3CP  -     chrX:27460211-27462416 -  Xp21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP4R3CP  -     Xp21.3   [Description]    (hg19-Feb_2009)
EnsemblPPP4R3CP - Xp21.3 [CytoView hg19]  PPP4R3CP - Xp21.3 [CytoView hg38]
Mapping of homologs : NCBIPPP4R3CP [Mapview hg19]  PPP4R3CP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057429 AK131475 DB022709 DB521738
RefSeq transcript (Entrez)NM_207319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP4R3CP
Cluster EST : UnigeneHs.641864 [ NCBI ]
CGAP (NCI)Hs.641864
Gene ExpressionPPP4R3CP [ NCBI-GEO ]   PPP4R3CP [ EBI - ARRAY_EXPRESS ]   PPP4R3CP [ SEEK ]   PPP4R3CP [ MEM ]
Gene Expression Viewer (FireBrowse)PPP4R3CP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139420
GTEX Portal (Tissue expression)PPP4R3CP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMV5
Splice isoforms : SwissVarQ6ZMV5
PhosPhoSitePlusQ6ZMV5
Domains : Interpro (EBI)ARM-type_fold    DUF625    PH_dom-like   
Domain families : Pfam (Sanger)SMK-1 (PF04802)   
Domain families : Pfam (NCBI)pfam04802   
Conserved Domain (NCBI)PPP4R3CP
DMDM Disease mutations139420
Blocks (Seattle)PPP4R3CP
SuperfamilyQ6ZMV5
Peptide AtlasQ6ZMV5
HPRD09960
IPIIPI00900377   IPI00410731   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMV5
IntAct (EBI)Q6ZMV5
BioGRIDPPP4R3CP
STRING (EMBL)PPP4R3CP
ZODIACPPP4R3CP
Ontologies - Pathways
QuickGOQ6ZMV5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPPP4R3CP
Atlas of Cancer Signalling NetworkPPP4R3CP
Wikipedia pathwaysPPP4R3CP
Orthology - Evolution
OrthoDB139420
Phylogenetic Trees/Animal Genes : TreeFamPPP4R3CP
HOVERGENQ6ZMV5
HOGENOMQ6ZMV5
Homologs : HomoloGenePPP4R3CP
Homology/Alignments : Family Browser (UCSC)PPP4R3CP
Gene fusions - Rearrangements
Tumor Fusion PortalPPP4R3CP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP4R3CP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP4R3CP
dbVarPPP4R3CP
ClinVarPPP4R3CP
1000_GenomesPPP4R3CP 
Exome Variant ServerPPP4R3CP
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP139420
Genomic Variants (DGV)PPP4R3CP [DGVbeta]
DECIPHERPPP4R3CP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP4R3CP 
Mutations
ICGC Data PortalPPP4R3CP 
TCGA Data PortalPPP4R3CP 
Broad Tumor PortalPPP4R3CP
OASIS PortalPPP4R3CP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPP4R3CP
BioMutasearch PPP4R3CP
DgiDB (Drug Gene Interaction Database)PPP4R3CP
DoCM (Curated mutations)PPP4R3CP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP4R3CP (select a term)
intoGenPPP4R3CP
Cancer3DPPP4R3CP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPPP4R3CP
MedgenPPP4R3CP
Genetic Testing Registry PPP4R3CP
NextProtQ6ZMV5 [Medical]
TSGene139420
GENETestsPPP4R3CP
Target ValidationPPP4R3CP
Huge Navigator PPP4R3CP [HugePedia]
snp3D : Map Gene to Disease139420
BioCentury BCIQPPP4R3CP
ClinGenPPP4R3CP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139420
Clinical trialPPP4R3CP
Miscellaneous
canSAR (ICR)PPP4R3CP (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP4R3CP
EVEXPPP4R3CP
GoPubMedPPP4R3CP
iHOPPPP4R3CP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:58:42 CET 2017

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