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PPP5D1 (PPP5 tetratricopeptide repeat domain containing 1)

Identity

Other alias-
HGNC (Hugo) PPP5D1
LocusID (NCBI) 100506012
Atlas_Id 72157
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46480788 and ends at 46601200 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPP5D1   44209
Cards
Entrez_Gene (NCBI)PPP5D1  100506012  PPP5 tetratricopeptide repeat domain containing 1
Aliases
GeneCards (Weizmann)PPP5D1
Ensembl hg19 (Hinxton)ENSG00000230510 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230510 [Gene_View]  chr19:46480788-46601200 [Contig_View]  PPP5D1 [Vega]
ICGC DataPortalENSG00000230510
TCGA cBioPortalPPP5D1
AceView (NCBI)PPP5D1
Genatlas (Paris)PPP5D1
WikiGenes100506012
SOURCE (Princeton)PPP5D1
Genetics Home Reference (NIH)PPP5D1
Genomic and cartography
GoldenPath hg38 (UCSC)PPP5D1  -     chr19:46480788-46601200 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP5D1  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblPPP5D1 - 19q13.32 [CytoView hg19]  PPP5D1 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIPPP5D1 [Mapview hg19]  PPP5D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094504 AW295427 BM718195 BU741810 DA130492
RefSeq transcript (Entrez)NM_001205281
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP5D1
Cluster EST : UnigeneHs.671661 [ NCBI ]
CGAP (NCI)Hs.671661
Alternative Splicing GalleryENSG00000230510
Gene ExpressionPPP5D1 [ NCBI-GEO ]   PPP5D1 [ EBI - ARRAY_EXPRESS ]   PPP5D1 [ SEEK ]   PPP5D1 [ MEM ]
Gene Expression Viewer (FireBrowse)PPP5D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506012
GTEX Portal (Tissue expression)PPP5D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtE7EU14   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE7EU14  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE7EU14
Splice isoforms : SwissVarE7EU14
PhosPhoSitePlusE7EU14
Domains : Interpro (EBI)PPP_dom   
Domain families : Pfam (Sanger)PPP5 (PF08321)   
Domain families : Pfam (NCBI)pfam08321   
Conserved Domain (NCBI)PPP5D1
DMDM Disease mutations100506012
Blocks (Seattle)PPP5D1
SuperfamilyE7EU14
Human Protein AtlasENSG00000230510
Peptide AtlasE7EU14
IPIIPI00982383   
Protein Interaction databases
DIP (DOE-UCLA)E7EU14
IntAct (EBI)E7EU14
FunCoupENSG00000230510
BioGRIDPPP5D1
STRING (EMBL)PPP5D1
ZODIACPPP5D1
Ontologies - Pathways
QuickGOE7EU14
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGMAPK signaling pathway   
NDEx NetworkPPP5D1
Atlas of Cancer Signalling NetworkPPP5D1
Wikipedia pathwaysPPP5D1
Orthology - Evolution
OrthoDB100506012
GeneTree (enSembl)ENSG00000230510
Phylogenetic Trees/Animal Genes : TreeFamPPP5D1
HOVERGENE7EU14
HOGENOME7EU14
Homologs : HomoloGenePPP5D1
Homology/Alignments : Family Browser (UCSC)PPP5D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP5D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPP5D1
dbVarPPP5D1
ClinVarPPP5D1
1000_GenomesPPP5D1 
Exome Variant ServerPPP5D1
ExAC (Exome Aggregation Consortium)PPP5D1 (select the gene name)
Genetic variants : HAPMAP100506012
Genomic Variants (DGV)PPP5D1 [DGVbeta]
DECIPHERPPP5D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP5D1 
Mutations
ICGC Data PortalPPP5D1 
TCGA Data PortalPPP5D1 
Broad Tumor PortalPPP5D1
OASIS PortalPPP5D1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPPP5D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPP5D1
DgiDB (Drug Gene Interaction Database)PPP5D1
DoCM (Curated mutations)PPP5D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP5D1 (select a term)
intoGenPPP5D1
Cancer3DPPP5D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPPP5D1
Genetic Testing Registry PPP5D1
NextProtE7EU14 [Medical]
TSGene100506012
GENETestsPPP5D1
Target ValidationPPP5D1
Huge Navigator PPP5D1 [HugePedia]
snp3D : Map Gene to Disease100506012
BioCentury BCIQPPP5D1
ClinGenPPP5D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506012
Chemical/Pharm GKB GenePA166049120
Clinical trialPPP5D1
Miscellaneous
canSAR (ICR)PPP5D1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPP5D1
EVEXPPP5D1
GoPubMedPPP5D1
iHOPPPP5D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:09 CEST 2017

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