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PPRC1 (peroxisome proliferator-activated receptor gamma, coactivator-related 1)

Identity

Alias_namesperoxisome proliferative activated receptor
Alias_symbol (synonym)PRC
KIAA0595
MGC74642
Other alias
HGNC (Hugo) PPRC1
LocusID (NCBI) 23082
Atlas_Id 47683
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 102132994 and ends at 102150333 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HACE1 (6q16.3) / PPRC1 (10q24.32)IGHV3OR16-7 () / PPRC1 (10q24.32)PPRC1 (10q24.32) / PPRC1 (10q24.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPRC1   30025
Cards
Entrez_Gene (NCBI)PPRC1  23082  peroxisome proliferator-activated receptor gamma, coactivator-related 1
AliasesPRC
GeneCards (Weizmann)PPRC1
Ensembl hg19 (Hinxton)ENSG00000148840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148840 [Gene_View]  chr10:102132994-102150333 [Contig_View]  PPRC1 [Vega]
ICGC DataPortalENSG00000148840
TCGA cBioPortalPPRC1
AceView (NCBI)PPRC1
Genatlas (Paris)PPRC1
WikiGenes23082
SOURCE (Princeton)PPRC1
Genetics Home Reference (NIH)PPRC1
Genomic and cartography
GoldenPath hg38 (UCSC)PPRC1  -     chr10:102132994-102150333 +  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPRC1  -     10q24.32   [Description]    (hg19-Feb_2009)
EnsemblPPRC1 - 10q24.32 [CytoView hg19]  PPRC1 - 10q24.32 [CytoView hg38]
Mapping of homologs : NCBIPPRC1 [Mapview hg19]  PPRC1 [Mapview hg38]
OMIM617462   
Gene and transcription
Genbank (Entrez)AB011167 AF325193 AK025691 AK095248 AK299885
RefSeq transcript (Entrez)NM_001288727 NM_001288728 NM_015062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPRC1
Cluster EST : UnigeneHs.533551 [ NCBI ]
CGAP (NCI)Hs.533551
Alternative Splicing GalleryENSG00000148840
Gene ExpressionPPRC1 [ NCBI-GEO ]   PPRC1 [ EBI - ARRAY_EXPRESS ]   PPRC1 [ SEEK ]   PPRC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PPRC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23082
GTEX Portal (Tissue expression)PPRC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VV67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VV67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VV67
Splice isoforms : SwissVarQ5VV67
PhosPhoSitePlusQ5VV67
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)PPRC1
DMDM Disease mutations23082
Blocks (Seattle)PPRC1
SuperfamilyQ5VV67
Human Protein AtlasENSG00000148840
Peptide AtlasQ5VV67
HPRD15173
IPIIPI00419509   IPI00854820   IPI00910608   IPI00646001   
Protein Interaction databases
DIP (DOE-UCLA)Q5VV67
IntAct (EBI)Q5VV67
FunCoupENSG00000148840
BioGRIDPPRC1
STRING (EMBL)PPRC1
ZODIACPPRC1
Ontologies - Pathways
QuickGOQ5VV67
Ontology : AmiGORNA polymerase II transcription cofactor activity  RNA binding  nucleus  nucleoplasm  nucleoplasm  transcription, DNA-templated  mitochondrion organization  transcription factor binding  ligand-dependent nuclear receptor transcription coactivator activity  positive regulation of transcription from RNA polymerase II promoter  positive regulation of sequence-specific DNA binding transcription factor activity  
Ontology : EGO-EBIRNA polymerase II transcription cofactor activity  RNA binding  nucleus  nucleoplasm  nucleoplasm  transcription, DNA-templated  mitochondrion organization  transcription factor binding  ligand-dependent nuclear receptor transcription coactivator activity  positive regulation of transcription from RNA polymerase II promoter  positive regulation of sequence-specific DNA binding transcription factor activity  
NDEx NetworkPPRC1
Atlas of Cancer Signalling NetworkPPRC1
Wikipedia pathwaysPPRC1
Orthology - Evolution
OrthoDB23082
GeneTree (enSembl)ENSG00000148840
Phylogenetic Trees/Animal Genes : TreeFamPPRC1
HOVERGENQ5VV67
HOGENOMQ5VV67
Homologs : HomoloGenePPRC1
Homology/Alignments : Family Browser (UCSC)PPRC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPRC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PPRC1
dbVarPPRC1
ClinVarPPRC1
1000_GenomesPPRC1 
Exome Variant ServerPPRC1
ExAC (Exome Aggregation Consortium)PPRC1 (select the gene name)
Genetic variants : HAPMAP23082
Genomic Variants (DGV)PPRC1 [DGVbeta]
DECIPHERPPRC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPRC1 
Mutations
ICGC Data PortalPPRC1 
TCGA Data PortalPPRC1 
Broad Tumor PortalPPRC1
OASIS PortalPPRC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPRC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPPRC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPRC1
DgiDB (Drug Gene Interaction Database)PPRC1
DoCM (Curated mutations)PPRC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPRC1 (select a term)
intoGenPPRC1
Cancer3DPPRC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617462   
Orphanet
MedgenPPRC1
Genetic Testing Registry PPRC1
NextProtQ5VV67 [Medical]
TSGene23082
GENETestsPPRC1
Target ValidationPPRC1
Huge Navigator PPRC1 [HugePedia]
snp3D : Map Gene to Disease23082
BioCentury BCIQPPRC1
ClinGenPPRC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23082
Chemical/Pharm GKB GenePA134886297
Clinical trialPPRC1
Miscellaneous
canSAR (ICR)PPRC1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPRC1
EVEXPPRC1
GoPubMedPPRC1
iHOPPPRC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:11:29 CEST 2017

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