Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PPT2-EGFL8 (PPT2-EGFL8 readthrough (NMD candidate))

Identity

Other alias-
HGNC (Hugo) PPT2-EGFL8
LocusID (NCBI) 100532746
Atlas_Id 72161
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32153999 and ends at 32168285 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PPT2-EGFL8   48343
Cards
Entrez_Gene (NCBI)PPT2-EGFL8  100532746  PPT2-EGFL8 readthrough (NMD candidate)
Aliases
GeneCards (Weizmann)PPT2-EGFL8
Ensembl hg19 (Hinxton)ENSG00000258388 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258388 [Gene_View]  ENSG00000258388 [Sequence]  chr6:32153999-32168285 [Contig_View]  PPT2-EGFL8 [Vega]
ICGC DataPortalENSG00000258388
TCGA cBioPortalPPT2-EGFL8
AceView (NCBI)PPT2-EGFL8
Genatlas (Paris)PPT2-EGFL8
WikiGenes100532746
SOURCE (Princeton)PPT2-EGFL8
Genetics Home Reference (NIH)PPT2-EGFL8
Genomic and cartography
GoldenPath hg38 (UCSC)PPT2-EGFL8  -     chr6:32153999-32168285 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPT2-EGFL8  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblPPT2-EGFL8 - 6p21.32 [CytoView hg19]  PPT2-EGFL8 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIPPT2-EGFL8 [Mapview hg19]  PPT2-EGFL8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209572 AF020544 AK290473 AK296648 AK307427
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)PPT2-EGFL8
Cluster EST : UnigeneHs.731888 [ NCBI ]
CGAP (NCI)Hs.731888
Alternative Splicing GalleryENSG00000258388
Gene ExpressionPPT2-EGFL8 [ NCBI-GEO ]   PPT2-EGFL8 [ EBI - ARRAY_EXPRESS ]   PPT2-EGFL8 [ SEEK ]   PPT2-EGFL8 [ MEM ]
Gene Expression Viewer (FireBrowse)PPT2-EGFL8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100532746
GTEX Portal (Tissue expression)PPT2-EGFL8
Human Protein AtlasENSG00000258388-PPT2-EGFL8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PPT2-EGFL8
DMDM Disease mutations100532746
Blocks (Seattle)PPT2-EGFL8
Human Protein Atlas [tissue]ENSG00000258388-PPT2-EGFL8 [tissue]
IPIIPI01014480   
Protein Interaction databases
FunCoupENSG00000258388
BioGRIDPPT2-EGFL8
STRING (EMBL)PPT2-EGFL8
ZODIACPPT2-EGFL8
Ontologies - Pathways
Huge Navigator PPT2-EGFL8 [HugePedia]
snp3D : Map Gene to Disease100532746
BioCentury BCIQPPT2-EGFL8
ClinGenPPT2-EGFL8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100532746
Clinical trialPPT2-EGFL8
Miscellaneous
canSAR (ICR)PPT2-EGFL8 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePPT2-EGFL8
EVEXPPT2-EGFL8
GoPubMedPPT2-EGFL8
iHOPPPT2-EGFL8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:24:52 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.