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PQLC1 (PQ loop repeat containing 1)

Identity

Alias_symbol (synonym)FLJ22378
Other alias-
HGNC (Hugo) PQLC1
LocusID (NCBI) 80148
Atlas_Id 72166
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 79902420 and ends at 79951653 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADNP2 (18q23) / PQLC1 (18q23)CTDP1 (18q23) / PQLC1 (18q23)PQLC1 (18q23) / HSBP1L1 (18q23)
PQLC1 (18q23) / PQLC1 (18q23)PQLC1 (18q23) / ZFAS1 (20q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PQLC1   26188
Cards
Entrez_Gene (NCBI)PQLC1  80148  PQ loop repeat containing 1
Aliases
GeneCards (Weizmann)PQLC1
Ensembl hg19 (Hinxton)ENSG00000122490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122490 [Gene_View]  chr18:79902420-79951653 [Contig_View]  PQLC1 [Vega]
ICGC DataPortalENSG00000122490
TCGA cBioPortalPQLC1
AceView (NCBI)PQLC1
Genatlas (Paris)PQLC1
WikiGenes80148
SOURCE (Princeton)PQLC1
Genetics Home Reference (NIH)PQLC1
Genomic and cartography
GoldenPath hg38 (UCSC)PQLC1  -     chr18:79902420-79951653 -  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PQLC1  -     18q23   [Description]    (hg19-Feb_2009)
EnsemblPQLC1 - 18q23 [CytoView hg19]  PQLC1 - 18q23 [CytoView hg38]
Mapping of homologs : NCBIPQLC1 [Mapview hg19]  PQLC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026031 AK123870 AK126188 AK301881 AK303818
RefSeq transcript (Entrez)NM_001146343 NM_001146345 NM_025078
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PQLC1
Cluster EST : UnigeneHs.288284 [ NCBI ]
CGAP (NCI)Hs.288284
Alternative Splicing GalleryENSG00000122490
Gene ExpressionPQLC1 [ NCBI-GEO ]   PQLC1 [ EBI - ARRAY_EXPRESS ]   PQLC1 [ SEEK ]   PQLC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PQLC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80148
GTEX Portal (Tissue expression)PQLC1
Human Protein AtlasENSG00000122490-PQLC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2U9
Splice isoforms : SwissVarQ8N2U9
PhosPhoSitePlusQ8N2U9
Domains : Interpro (EBI)PQ-loop_rpt   
Domain families : Pfam (Sanger)PQ-loop (PF04193)   
Domain families : Pfam (NCBI)pfam04193   
Domain families : Smart (EMBL)CTNS (SM00679)  
Conserved Domain (NCBI)PQLC1
DMDM Disease mutations80148
Blocks (Seattle)PQLC1
SuperfamilyQ8N2U9
Human Protein Atlas [tissue]ENSG00000122490-PQLC1 [tissue]
Peptide AtlasQ8N2U9
HPRD11454
IPIIPI00181586   IPI00642804   IPI00018001   IPI00917992   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2U9
IntAct (EBI)Q8N2U9
FunCoupENSG00000122490
BioGRIDPQLC1
STRING (EMBL)PQLC1
ZODIACPQLC1
Ontologies - Pathways
QuickGOQ8N2U9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkPQLC1
Atlas of Cancer Signalling NetworkPQLC1
Wikipedia pathwaysPQLC1
Orthology - Evolution
OrthoDB80148
GeneTree (enSembl)ENSG00000122490
Phylogenetic Trees/Animal Genes : TreeFamPQLC1
HOVERGENQ8N2U9
HOGENOMQ8N2U9
Homologs : HomoloGenePQLC1
Homology/Alignments : Family Browser (UCSC)PQLC1
Gene fusions - Rearrangements
Fusion: Tumor Portal PQLC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPQLC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PQLC1
dbVarPQLC1
ClinVarPQLC1
1000_GenomesPQLC1 
Exome Variant ServerPQLC1
ExAC (Exome Aggregation Consortium)ENSG00000122490
GNOMAD BrowserENSG00000122490
Genetic variants : HAPMAP80148
Genomic Variants (DGV)PQLC1 [DGVbeta]
DECIPHERPQLC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPQLC1 
Mutations
ICGC Data PortalPQLC1 
TCGA Data PortalPQLC1 
Broad Tumor PortalPQLC1
OASIS PortalPQLC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPQLC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPQLC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PQLC1
DgiDB (Drug Gene Interaction Database)PQLC1
DoCM (Curated mutations)PQLC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PQLC1 (select a term)
intoGenPQLC1
Cancer3DPQLC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPQLC1
Genetic Testing Registry PQLC1
NextProtQ8N2U9 [Medical]
TSGene80148
GENETestsPQLC1
Target ValidationPQLC1
Huge Navigator PQLC1 [HugePedia]
snp3D : Map Gene to Disease80148
BioCentury BCIQPQLC1
ClinGenPQLC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80148
Chemical/Pharm GKB GenePA134958806
Clinical trialPQLC1
Miscellaneous
canSAR (ICR)PQLC1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePQLC1
EVEXPQLC1
GoPubMedPQLC1
iHOPPQLC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:23:25 CET 2017

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