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PQLC2L (PQ loop repeat containing 2 like)

Identity

Alias_namesC3orf55
chromosome 3 open reading frame 55
Other alias
HGNC (Hugo) PQLC2L
LocusID (NCBI) 152078
Atlas_Id 54173
Location 3q25.32  [Link to chromosome band 3q25]
Location_base_pair Starts at 157543344 and ends at 157578891 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GMPS (3q25.31) / PQLC2L (3q25.32)PQLC2L (3q25.32) / CHRD (3q27.1)PQLC2L (3q25.32) / VEPH1 (3q25.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)PQLC2L   25146
Cards
Entrez_Gene (NCBI)PQLC2L  152078  PQ loop repeat containing 2 like
AliasesC3orf55
GeneCards (Weizmann)PQLC2L
Ensembl hg19 (Hinxton)ENSG00000174899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174899 [Gene_View]  chr3:157543344-157578891 [Contig_View]  PQLC2L [Vega]
ICGC DataPortalENSG00000174899
TCGA cBioPortalPQLC2L
AceView (NCBI)PQLC2L
Genatlas (Paris)PQLC2L
WikiGenes152078
SOURCE (Princeton)PQLC2L
Genetics Home Reference (NIH)PQLC2L
Genomic and cartography
GoldenPath hg38 (UCSC)PQLC2L  -     chr3:157543344-157578891 +  3q25.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PQLC2L  -     3q25.32   [Description]    (hg19-Feb_2009)
EnsemblPQLC2L - 3q25.32 [CytoView hg19]  PQLC2L - 3q25.32 [CytoView hg38]
Mapping of homologs : NCBIPQLC2L [Mapview hg19]  PQLC2L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA131625 AI377021 AW151487 BC010062 BC029129
RefSeq transcript (Entrez)NM_001099777 NM_001130001 NM_001130002 NM_001243729
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PQLC2L
Cluster EST : UnigeneHs.259046 [ NCBI ]
CGAP (NCI)Hs.259046
Alternative Splicing GalleryENSG00000174899
Gene ExpressionPQLC2L [ NCBI-GEO ]   PQLC2L [ EBI - ARRAY_EXPRESS ]   PQLC2L [ SEEK ]   PQLC2L [ MEM ]
Gene Expression Viewer (FireBrowse)PQLC2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152078
GTEX Portal (Tissue expression)PQLC2L
Human Protein AtlasENSG00000174899-PQLC2L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1A4F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1A4F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1A4F0
Splice isoforms : SwissVarA1A4F0
PhosPhoSitePlusA1A4F0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PQLC2L
DMDM Disease mutations152078
Blocks (Seattle)PQLC2L
SuperfamilyA1A4F0
Human Protein Atlas [tissue]ENSG00000174899-PQLC2L [tissue]
Peptide AtlasA1A4F0
IPIIPI00908820   IPI00455588   IPI00983671   IPI00788855   IPI00947470   IPI00947498   
Protein Interaction databases
DIP (DOE-UCLA)A1A4F0
IntAct (EBI)A1A4F0
FunCoupENSG00000174899
BioGRIDPQLC2L
STRING (EMBL)PQLC2L
ZODIACPQLC2L
Ontologies - Pathways
QuickGOA1A4F0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPQLC2L
Atlas of Cancer Signalling NetworkPQLC2L
Wikipedia pathwaysPQLC2L
Orthology - Evolution
OrthoDB152078
GeneTree (enSembl)ENSG00000174899
Phylogenetic Trees/Animal Genes : TreeFamPQLC2L
HOVERGENA1A4F0
HOGENOMA1A4F0
Homologs : HomoloGenePQLC2L
Homology/Alignments : Family Browser (UCSC)PQLC2L
Gene fusions - Rearrangements
Fusion : MitelmanGMPS/PQLC2L [3q25.31/3q25.32]  [t(3;3)(q25;q25)]  
Fusion : MitelmanPQLC2L/CHRD [3q25.32/3q27.1]  [t(3;3)(q25;q27)]  
Fusion : MitelmanPQLC2L/VEPH1 [3q25.32/3q25.31]  [t(3;3)(q25;q25)]  
Tumor Fusion PortalPQLC2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPQLC2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PQLC2L
dbVarPQLC2L
ClinVarPQLC2L
1000_GenomesPQLC2L 
Exome Variant ServerPQLC2L
ExAC (Exome Aggregation Consortium)ENSG00000174899
GNOMAD BrowserENSG00000174899
Genetic variants : HAPMAP152078
Genomic Variants (DGV)PQLC2L [DGVbeta]
DECIPHERPQLC2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPQLC2L 
Mutations
ICGC Data PortalPQLC2L 
TCGA Data PortalPQLC2L 
Broad Tumor PortalPQLC2L
OASIS PortalPQLC2L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPQLC2L
BioMutasearch PQLC2L
DgiDB (Drug Gene Interaction Database)PQLC2L
DoCM (Curated mutations)PQLC2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PQLC2L (select a term)
intoGenPQLC2L
Cancer3DPQLC2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPQLC2L
MedgenPQLC2L
Genetic Testing Registry PQLC2L
NextProtA1A4F0 [Medical]
TSGene152078
GENETestsPQLC2L
Target ValidationPQLC2L
Huge Navigator PQLC2L [HugePedia]
snp3D : Map Gene to Disease152078
BioCentury BCIQPQLC2L
ClinGenPQLC2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152078
Chemical/Pharm GKB GenePA143485331
Clinical trialPQLC2L
Miscellaneous
canSAR (ICR)PQLC2L (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePQLC2L
EVEXPQLC2L
GoPubMedPQLC2L
iHOPPQLC2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:30:05 CET 2017

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