Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PQLC3 (PQ loop repeat containing 3)

Identity

Alias_namesC2orf22
chromosome 2 open reading frame 22
Alias_symbol (synonym)MGC33602
Other alias
HGNC (Hugo) PQLC3
LocusID (NCBI) 130814
Atlas_Id 72169
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 11295498 and ends at 11318998 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ALK (2p23.2) / PQLC3 (2p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PQLC3   28503
Cards
Entrez_Gene (NCBI)PQLC3  130814  PQ loop repeat containing 3
AliasesC2orf22
GeneCards (Weizmann)PQLC3
Ensembl hg19 (Hinxton)ENSG00000162976 [Gene_View]  chr2:11295498-11318998 [Contig_View]  PQLC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162976 [Gene_View]  chr2:11295498-11318998 [Contig_View]  PQLC3 [Vega]
ICGC DataPortalENSG00000162976
TCGA cBioPortalPQLC3
AceView (NCBI)PQLC3
Genatlas (Paris)PQLC3
WikiGenes130814
SOURCE (Princeton)PQLC3
Genetics Home Reference (NIH)PQLC3
Genomic and cartography
GoldenPath hg19 (UCSC)PQLC3  -     chr2:11295498-11318998 +  2p25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PQLC3  -     2p25.1   [Description]    (hg38-Dec_2013)
EnsemblPQLC3 - 2p25.1 [CytoView hg19]  PQLC3 - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBIPQLC3 [Mapview hg19]  PQLC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA076049 AK001091 AK301439 AK313402 AL548337
RefSeq transcript (Entrez)NM_001282710 NM_001282711 NM_001282712 NM_152391
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005334 NW_004929298
Consensus coding sequences : CCDS (NCBI)PQLC3
Cluster EST : UnigeneHs.274415 [ NCBI ]
CGAP (NCI)Hs.274415
Alternative Splicing GalleryENSG00000162976
Gene ExpressionPQLC3 [ NCBI-GEO ]   PQLC3 [ EBI - ARRAY_EXPRESS ]   PQLC3 [ SEEK ]   PQLC3 [ MEM ]
Gene Expression Viewer (FireBrowse)PQLC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130814
GTEX Portal (Tissue expression)PQLC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N755   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N755  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N755
Splice isoforms : SwissVarQ8N755
PhosPhoSitePlusQ8N755
Domains : Interpro (EBI)MannP-dilichol_defect-1    PQ-loop_rpt   
Domain families : Pfam (Sanger)PQ-loop (PF04193)   
Domain families : Pfam (NCBI)pfam04193   
Domain families : Smart (EMBL)CTNS (SM00679)  
Conserved Domain (NCBI)PQLC3
DMDM Disease mutations130814
Blocks (Seattle)PQLC3
SuperfamilyQ8N755
Human Protein AtlasENSG00000162976
Peptide AtlasQ8N755
HPRD12810
IPIIPI00167098   IPI00893965   IPI00893221   IPI00893723   IPI00893557   
Protein Interaction databases
DIP (DOE-UCLA)Q8N755
IntAct (EBI)Q8N755
FunCoupENSG00000162976
BioGRIDPQLC3
STRING (EMBL)PQLC3
ZODIACPQLC3
Ontologies - Pathways
QuickGOQ8N755
Ontology : AmiGOendoplasmic reticulum  dolichol-linked oligosaccharide biosynthetic process  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum  dolichol-linked oligosaccharide biosynthetic process  integral component of membrane  
NDEx NetworkPQLC3
Atlas of Cancer Signalling NetworkPQLC3
Wikipedia pathwaysPQLC3
Orthology - Evolution
OrthoDB130814
GeneTree (enSembl)ENSG00000162976
Phylogenetic Trees/Animal Genes : TreeFamPQLC3
HOVERGENQ8N755
HOGENOMQ8N755
Homologs : HomoloGenePQLC3
Homology/Alignments : Family Browser (UCSC)PQLC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPQLC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PQLC3
dbVarPQLC3
ClinVarPQLC3
1000_GenomesPQLC3 
Exome Variant ServerPQLC3
ExAC (Exome Aggregation Consortium)PQLC3 (select the gene name)
Genetic variants : HAPMAP130814
Genomic Variants (DGV)PQLC3 [DGVbeta]
DECIPHER (Syndromes)2:11295498-11318998  ENSG00000162976
CONAN: Copy Number AnalysisPQLC3 
Mutations
ICGC Data PortalPQLC3 
TCGA Data PortalPQLC3 
Broad Tumor PortalPQLC3
OASIS PortalPQLC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPQLC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPQLC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PQLC3
DgiDB (Drug Gene Interaction Database)PQLC3
DoCM (Curated mutations)PQLC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PQLC3 (select a term)
intoGenPQLC3
Cancer3DPQLC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPQLC3
Genetic Testing Registry PQLC3
NextProtQ8N755 [Medical]
TSGene130814
GENETestsPQLC3
Huge Navigator PQLC3 [HugePedia]
snp3D : Map Gene to Disease130814
BioCentury BCIQPQLC3
ClinGenPQLC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130814
Chemical/Pharm GKB GenePA134941925
Clinical trialPQLC3
Miscellaneous
canSAR (ICR)PQLC3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePQLC3
EVEXPQLC3
GoPubMedPQLC3
iHOPPQLC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:39:30 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.