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PRAC1 (PRAC1 small nuclear protein)

Identity

Alias_namesrectum and colon
C17orf92
PRAC
Other alias
HGNC (Hugo) PRAC1
LocusID (NCBI) 84366
Atlas_Id 50460
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 48721720 and ends at 48722520 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAC1   30591
Cards
Entrez_Gene (NCBI)PRAC1  84366  PRAC1 small nuclear protein
AliasesC17orf92; PRAC
GeneCards (Weizmann)PRAC1
Ensembl hg19 (Hinxton)ENSG00000159182 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159182 [Gene_View]  chr17:48721720-48722520 [Contig_View]  PRAC1 [Vega]
ICGC DataPortalENSG00000159182
TCGA cBioPortalPRAC1
AceView (NCBI)PRAC1
Genatlas (Paris)PRAC1
WikiGenes84366
SOURCE (Princeton)PRAC1
Genetics Home Reference (NIH)PRAC1
Genomic and cartography
GoldenPath hg38 (UCSC)PRAC1  -     chr17:48721720-48722520 -  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAC1  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblPRAC1 - 17q21.32 [CytoView hg19]  PRAC1 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIPRAC1 [Mapview hg19]  PRAC1 [Mapview hg38]
OMIM609819   
Gene and transcription
Genbank (Entrez)AF331165 BC030950 BU535394
RefSeq transcript (Entrez)NM_032391
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAC1
Cluster EST : UnigeneHs.116467 [ NCBI ]
CGAP (NCI)Hs.116467
Alternative Splicing GalleryENSG00000159182
Gene ExpressionPRAC1 [ NCBI-GEO ]   PRAC1 [ EBI - ARRAY_EXPRESS ]   PRAC1 [ SEEK ]   PRAC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84366
GTEX Portal (Tissue expression)PRAC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KF2
Splice isoforms : SwissVarQ96KF2
PhosPhoSitePlusQ96KF2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAC1
DMDM Disease mutations84366
Blocks (Seattle)PRAC1
SuperfamilyQ96KF2
Human Protein AtlasENSG00000159182
Peptide AtlasQ96KF2
HPRD17897
IPIIPI00064590   
Protein Interaction databases
DIP (DOE-UCLA)Q96KF2
IntAct (EBI)Q96KF2
FunCoupENSG00000159182
BioGRIDPRAC1
STRING (EMBL)PRAC1
ZODIACPRAC1
Ontologies - Pathways
QuickGOQ96KF2
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkPRAC1
Atlas of Cancer Signalling NetworkPRAC1
Wikipedia pathwaysPRAC1
Orthology - Evolution
OrthoDB84366
GeneTree (enSembl)ENSG00000159182
Phylogenetic Trees/Animal Genes : TreeFamPRAC1
HOVERGENQ96KF2
HOGENOMQ96KF2
Homologs : HomoloGenePRAC1
Homology/Alignments : Family Browser (UCSC)PRAC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAC1
dbVarPRAC1
ClinVarPRAC1
1000_GenomesPRAC1 
Exome Variant ServerPRAC1
ExAC (Exome Aggregation Consortium)PRAC1 (select the gene name)
Genetic variants : HAPMAP84366
Genomic Variants (DGV)PRAC1 [DGVbeta]
DECIPHERPRAC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAC1 
Mutations
ICGC Data PortalPRAC1 
TCGA Data PortalPRAC1 
Broad Tumor PortalPRAC1
OASIS PortalPRAC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRAC1
BioMutasearch PRAC1
DgiDB (Drug Gene Interaction Database)PRAC1
DoCM (Curated mutations)PRAC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAC1 (select a term)
intoGenPRAC1
Cancer3DPRAC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609819   
Orphanet
MedgenPRAC1
Genetic Testing Registry PRAC1
NextProtQ96KF2 [Medical]
TSGene84366
GENETestsPRAC1
Target ValidationPRAC1
Huge Navigator PRAC1 [HugePedia]
snp3D : Map Gene to Disease84366
BioCentury BCIQPRAC1
ClinGenPRAC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84366
Chemical/Pharm GKB GenePA164725009
Clinical trialPRAC1
Miscellaneous
canSAR (ICR)PRAC1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAC1
EVEXPRAC1
GoPubMedPRAC1
iHOPPRAC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:11:30 CEST 2017

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