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PRAC2 (PRAC2 small nuclear protein)

Identity

Alias (NCBI)C17orf93
HOXB-AS5
HOXB13-AS1
HOXBAS5
NCRNA00253
HGNC (Hugo) PRAC2
HGNC Alias nameprostate, rectum and colon 2
HGNC Previous nameC17orf93
 NCRNA00253
 HOXB13-AS1
 HOXB-AS5
HGNC Previous namechromosome 17 open reading frame 93
 non-protein coding RNA 253
 HOXB13 antisense RNA 1 (non-protein coding)
 HOXB cluster antisense RNA 5 (non-protein coding)
 HOXB cluster antisense RNA 5
 prostate cancer susceptibility candidate 2
LocusID (NCBI) 360205
Atlas_Id 53513
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 48723692 and ends at 48724758 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PRAC2   30143
Cards
Entrez_Gene (NCBI)PRAC2  360205  PRAC2 small nuclear protein
AliasesC17orf93; HOXB-AS5; HOXB13-AS1; HOXBAS5; 
NCRNA00253
GeneCards (Weizmann)PRAC2
Ensembl hg19 (Hinxton)ENSG00000229637 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229637 [Gene_View]  ENSG00000229637 [Sequence]  chr17:48723692-48724758 [Contig_View]  PRAC2 [Vega]
ICGC DataPortalENSG00000229637
TCGA cBioPortalPRAC2
AceView (NCBI)PRAC2
Genatlas (Paris)PRAC2
WikiGenes360205
SOURCE (Princeton)PRAC2
Genetics Home Reference (NIH)PRAC2
Genomic and cartography
GoldenPath hg38 (UCSC)PRAC2  -     chr17:48723692-48724758 +  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAC2  -     17q21.32   [Description]    (hg19-Feb_2009)
GoldenPathPRAC2 - 17q21.32 [CytoView hg19]  PRAC2 - 17q21.32 [CytoView hg38]
ImmunoBaseENSG00000229637
genome Data Viewer NCBIPRAC2 [Mapview hg19]  
OMIM610787   
Gene and transcription
Genbank (Entrez)AF532777 AI201489 AI762586 BX106051
RefSeq transcript (Entrez)NM_001282275 NM_001282276
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAC2
Alternative Splicing GalleryENSG00000229637
Gene ExpressionPRAC2 [ NCBI-GEO ]   PRAC2 [ EBI - ARRAY_EXPRESS ]   PRAC2 [ SEEK ]   PRAC2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAC2 [ Firebrowse - Broad ]
GenevisibleExpression of PRAC2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)360205
GTEX Portal (Tissue expression)PRAC2
Human Protein AtlasENSG00000229637-PRAC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtD3DTV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtD3DTV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProD3DTV9
Splice isoforms : SwissVarD3DTV9
PhosPhoSitePlusD3DTV9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAC2
DMDM Disease mutations360205
Blocks (Seattle)PRAC2
SuperfamilyD3DTV9
Human Protein Atlas [tissue]ENSG00000229637-PRAC2 [tissue]
Peptide AtlasD3DTV9
IPIIPI00791469   
Protein Interaction databases
DIP (DOE-UCLA)D3DTV9
IntAct (EBI)D3DTV9
FunCoupENSG00000229637
BioGRIDPRAC2
STRING (EMBL)PRAC2
ZODIACPRAC2
Ontologies - Pathways
QuickGOD3DTV9
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkPRAC2
Atlas of Cancer Signalling NetworkPRAC2
Wikipedia pathwaysPRAC2
Orthology - Evolution
OrthoDB360205
GeneTree (enSembl)ENSG00000229637
Phylogenetic Trees/Animal Genes : TreeFamPRAC2
HOGENOMD3DTV9
Homologs : HomoloGenePRAC2
Homology/Alignments : Family Browser (UCSC)PRAC2
Gene fusions - Rearrangements
Fusion : QuiverPRAC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAC2
dbVarPRAC2
ClinVarPRAC2
MonarchPRAC2
1000_GenomesPRAC2 
Exome Variant ServerPRAC2
GNOMAD BrowserENSG00000229637
Varsome BrowserPRAC2
Genetic variants : HAPMAP360205
Genomic Variants (DGV)PRAC2 [DGVbeta]
DECIPHERPRAC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAC2 
Mutations
ICGC Data PortalPRAC2 
TCGA Data PortalPRAC2 
Broad Tumor PortalPRAC2
OASIS PortalPRAC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAC2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPRAC2
Mutations and Diseases : HGMDPRAC2
BioMutasearch PRAC2
DgiDB (Drug Gene Interaction Database)PRAC2
DoCM (Curated mutations)PRAC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAC2 (select a term)
intoGenPRAC2
Cancer3DPRAC2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610787   
Orphanet
DisGeNETPRAC2
MedgenPRAC2
Genetic Testing Registry PRAC2
NextProtD3DTV9 [Medical]
TSGene360205
GENETestsPRAC2
Target ValidationPRAC2
Huge Navigator PRAC2 [HugePedia]
snp3D : Map Gene to Disease360205
BioCentury BCIQPRAC2
ClinGenPRAC2
Clinical trials, drugs, therapy
Protein Interactions : CTD360205
Pharm GKB GenePA165432260
Clinical trialPRAC2
Miscellaneous
canSAR (ICR)PRAC2 (select the gene name)
HarmonizomePRAC2
DataMed IndexPRAC2
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAC2
EVEXPRAC2
GoPubMedPRAC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:28:01 CEST 2020

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