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PRADC1 (protease associated domain containing 1)

Identity

Alias_namesC2orf7
chromosome 2 open reading frame 7
Alias_symbol (synonym)MGC13004
PAP21
hPAP21
Other alias
HGNC (Hugo) PRADC1
LocusID (NCBI) 84279
Atlas_Id 72170
Location 2p13.2  [Link to chromosome band 2p13]
Location_base_pair Starts at 73228006 and ends at 73233284 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRADC1   16047
Cards
Entrez_Gene (NCBI)PRADC1  84279  protease associated domain containing 1
AliasesC2orf7; PAP21
GeneCards (Weizmann)PRADC1
Ensembl hg19 (Hinxton)ENSG00000135617 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135617 [Gene_View]  chr2:73228006-73233284 [Contig_View]  PRADC1 [Vega]
ICGC DataPortalENSG00000135617
TCGA cBioPortalPRADC1
AceView (NCBI)PRADC1
Genatlas (Paris)PRADC1
WikiGenes84279
SOURCE (Princeton)PRADC1
Genetics Home Reference (NIH)PRADC1
Genomic and cartography
GoldenPath hg38 (UCSC)PRADC1  -     chr2:73228006-73233284 -  2p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRADC1  -     2p13.2   [Description]    (hg19-Feb_2009)
EnsemblPRADC1 - 2p13.2 [CytoView hg19]  PRADC1 - 2p13.2 [CytoView hg38]
Mapping of homologs : NCBIPRADC1 [Mapview hg19]  PRADC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK312077 AY358605 BC005069 BM556790 JF432602
RefSeq transcript (Entrez)NM_032319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRADC1
Cluster EST : UnigeneHs.61268 [ NCBI ]
CGAP (NCI)Hs.61268
Alternative Splicing GalleryENSG00000135617
Gene ExpressionPRADC1 [ NCBI-GEO ]   PRADC1 [ EBI - ARRAY_EXPRESS ]   PRADC1 [ SEEK ]   PRADC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRADC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84279
GTEX Portal (Tissue expression)PRADC1
Human Protein AtlasENSG00000135617-PRADC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSG0
Splice isoforms : SwissVarQ9BSG0
PhosPhoSitePlusQ9BSG0
Domains : Interpro (EBI)PA_domain   
Domain families : Pfam (Sanger)PA (PF02225)   
Domain families : Pfam (NCBI)pfam02225   
Conserved Domain (NCBI)PRADC1
DMDM Disease mutations84279
Blocks (Seattle)PRADC1
SuperfamilyQ9BSG0
Human Protein Atlas [tissue]ENSG00000135617-PRADC1 [tissue]
Peptide AtlasQ9BSG0
HPRD12815
IPIIPI00031138   IPI00921245   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSG0
IntAct (EBI)Q9BSG0
FunCoupENSG00000135617
BioGRIDPRADC1
STRING (EMBL)PRADC1
ZODIACPRADC1
Ontologies - Pathways
QuickGOQ9BSG0
Ontology : AmiGOprotein binding  extracellular region  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular region  extracellular exosome  
NDEx NetworkPRADC1
Atlas of Cancer Signalling NetworkPRADC1
Wikipedia pathwaysPRADC1
Orthology - Evolution
OrthoDB84279
GeneTree (enSembl)ENSG00000135617
Phylogenetic Trees/Animal Genes : TreeFamPRADC1
HOVERGENQ9BSG0
HOGENOMQ9BSG0
Homologs : HomoloGenePRADC1
Homology/Alignments : Family Browser (UCSC)PRADC1
Gene fusions - Rearrangements
Fusion: Tumor Portal PRADC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRADC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRADC1
dbVarPRADC1
ClinVarPRADC1
1000_GenomesPRADC1 
Exome Variant ServerPRADC1
ExAC (Exome Aggregation Consortium)ENSG00000135617
GNOMAD BrowserENSG00000135617
Genetic variants : HAPMAP84279
Genomic Variants (DGV)PRADC1 [DGVbeta]
DECIPHERPRADC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRADC1 
Mutations
ICGC Data PortalPRADC1 
TCGA Data PortalPRADC1 
Broad Tumor PortalPRADC1
OASIS PortalPRADC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRADC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRADC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRADC1
DgiDB (Drug Gene Interaction Database)PRADC1
DoCM (Curated mutations)PRADC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRADC1 (select a term)
intoGenPRADC1
Cancer3DPRADC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRADC1
Genetic Testing Registry PRADC1
NextProtQ9BSG0 [Medical]
TSGene84279
GENETestsPRADC1
Target ValidationPRADC1
Huge Navigator PRADC1 [HugePedia]
snp3D : Map Gene to Disease84279
BioCentury BCIQPRADC1
ClinGenPRADC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84279
Chemical/Pharm GKB GenePA25895
Clinical trialPRADC1
Miscellaneous
canSAR (ICR)PRADC1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRADC1
EVEXPRADC1
GoPubMedPRADC1
iHOPPRADC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 12:23:26 CET 2017

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