Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PRAF2 (PRA1 domain family, member 2)

Identity

Other names-
HGNC (Hugo) PRAF2
LocusID (NCBI) 11230
Location Xp11.23
Location_base_pair Starts at 48928813 and ends at 48931704 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRAF2   28911
Cards
Entrez_Gene (NCBI)PRAF2  11230  PRA1 domain family, member 2
GeneCards (Weizmann)PRAF2
Ensembl (Hinxton)ENSG00000243279 [Gene_View]  chrX:48928813-48931704 [Contig_View]  PRAF2 [Vega]
AceView (NCBI)PRAF2
Genatlas (Paris)PRAF2
WikiGenes11230
SOURCE (Princeton)NM_007213
Genomic and cartography
GoldenPath (UCSC)PRAF2  -  Xp11.23   chrX:48928813-48931704 -  Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblPRAF2 - Xp11.23 [CytoView]
Mapping of homologs : NCBIPRAF2 [Mapview]
OMIM300840   
Gene and transcription
Genbank (Entrez)AA720948 AJ005896 AK023433 AK315374 BC021213
RefSeq transcript (Entrez)NM_007213
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NT_079573 NW_001842363 NW_004070880 NW_004929439
Consensus coding sequences : CCDS (NCBI)PRAF2
Cluster EST : UnigeneHs.29595 [ NCBI ]
CGAP (NCI)Hs.29595
Alternative Splicing : Fast-db (Paris)GSHG0032088
Alternative Splicing GalleryENSG00000243279
Gene ExpressionPRAF2 [ NCBI-GEO ]     PRAF2 [ SEEK ]   PRAF2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60831 (Uniprot)
NextProtO60831  [Medical]
With graphics : InterProO60831
Splice isoforms : SwissVarO60831 (Swissvar)
Domains : Interpro (EBI)Prenylated_rab_accept_PRA1   
Related proteins : CluSTrO60831
Domain families : Pfam (Sanger)PRA1 (PF03208)   
Domain families : Pfam (NCBI)pfam03208   
DMDM Disease mutations11230
Blocks (Seattle)O60831
Human Protein AtlasENSG00000243279
Peptide AtlasO60831
HPRD06596
IPIIPI00026994   IPI00640188   
Protein Interaction databases
DIP (DOE-UCLA)O60831
IntAct (EBI)O60831
FunCoupENSG00000243279
BioGRIDPRAF2
InParanoidO60831
Interologous Interaction database O60831
IntegromeDBPRAF2
STRING (EMBL)PRAF2
Ontologies - Pathways
Ontology : AmiGOendosome membrane  protein transport  L-glutamate transport  integral to membrane  
Ontology : EGO-EBIendosome membrane  protein transport  L-glutamate transport  integral to membrane  
REACTOMEPRAF2
Protein Interaction DatabasePRAF2
Wikipedia pathwaysPRAF2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PRAF2
SNP (GeneSNP Utah)PRAF2
SNP : HGBasePRAF2
Genetic variants : HAPMAPPRAF2
1000_GenomesPRAF2 
ICGC programENSG00000243279 
Somatic Mutations in Cancer : COSMICPRAF2 
CONAN: Copy Number AnalysisPRAF2 
Mutations and Diseases : HGMDPRAF2
OMIM300840   
GENETestsPRAF2
Disease Genetic AssociationPRAF2
Huge Navigator PRAF2 [HugePedia]  PRAF2 [HugeCancerGEM]
Genomic VariantsPRAF2  PRAF2 [DGVbeta]
Exome VariantPRAF2
dbVarPRAF2
ClinVarPRAF2
snp3D : Map Gene to Disease11230
General knowledge
Homologs : HomoloGenePRAF2
Homology/Alignments : Family Browser (UCSC)PRAF2
Phylogenetic Trees/Animal Genes : TreeFamPRAF2
Chemical/Protein Interactions : CTD11230
Chemical/Pharm GKB GenePA134955002
Clinical trialPRAF2
Cancer Resource (Charite)ENSG00000243279
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
CoreMinePRAF2
iHOPPRAF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:02:43 CEST 2014

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