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PRAMEF1 (PRAME family member 1)

Identity

Other alias-
HGNC (Hugo) PRAMEF1
LocusID (NCBI) 65121
Atlas_Id 41183
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12794691 and ends at 12796628 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF1   28840
Cards
Entrez_Gene (NCBI)PRAMEF1  65121  PRAME family member 1
Aliases
GeneCards (Weizmann)PRAMEF1
Ensembl hg19 (Hinxton)ENSG00000116721 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116721 [Gene_View]  chr1:12794691-12796628 [Contig_View]  PRAMEF1 [Vega]
ICGC DataPortalENSG00000116721
TCGA cBioPortalPRAMEF1
AceView (NCBI)PRAMEF1
Genatlas (Paris)PRAMEF1
WikiGenes65121
SOURCE (Princeton)PRAMEF1
Genetics Home Reference (NIH)PRAMEF1
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF1  -     chr1:12794691-12796628 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF1  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF1 - 1p36.21 [CytoView hg19]  PRAMEF1 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF1 [Mapview hg19]  PRAMEF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125568 AL049686 BC040902 BC144199 DA903707
RefSeq transcript (Entrez)NM_001294139 NM_023013
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF1
Cluster EST : UnigeneHs.744789 [ NCBI ]
CGAP (NCI)Hs.744789
Alternative Splicing GalleryENSG00000116721
Gene ExpressionPRAMEF1 [ NCBI-GEO ]   PRAMEF1 [ EBI - ARRAY_EXPRESS ]   PRAMEF1 [ SEEK ]   PRAMEF1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65121
GTEX Portal (Tissue expression)PRAMEF1
Human Protein AtlasENSG00000116721-PRAMEF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95521   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95521  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95521
Splice isoforms : SwissVarO95521
PhosPhoSitePlusO95521
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF1
DMDM Disease mutations65121
Blocks (Seattle)PRAMEF1
SuperfamilyO95521
Human Protein Atlas [tissue]ENSG00000116721-PRAMEF1 [tissue]
Peptide AtlasO95521
HPRD11272
IPIIPI00395726   IPI00640483   
Protein Interaction databases
DIP (DOE-UCLA)O95521
IntAct (EBI)O95521
FunCoupENSG00000116721
BioGRIDPRAMEF1
STRING (EMBL)PRAMEF1
ZODIACPRAMEF1
Ontologies - Pathways
QuickGOO95521
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF1
Atlas of Cancer Signalling NetworkPRAMEF1
Wikipedia pathwaysPRAMEF1
Orthology - Evolution
OrthoDB65121
GeneTree (enSembl)ENSG00000116721
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF1
HOVERGENO95521
HOGENOMO95521
Homologs : HomoloGenePRAMEF1
Homology/Alignments : Family Browser (UCSC)PRAMEF1
Gene fusions - Rearrangements
Fusion: Tumor Portal PRAMEF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF1
dbVarPRAMEF1
ClinVarPRAMEF1
1000_GenomesPRAMEF1 
Exome Variant ServerPRAMEF1
ExAC (Exome Aggregation Consortium)ENSG00000116721
GNOMAD BrowserENSG00000116721
Genetic variants : HAPMAP65121
Genomic Variants (DGV)PRAMEF1 [DGVbeta]
DECIPHERPRAMEF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF1 
Mutations
ICGC Data PortalPRAMEF1 
TCGA Data PortalPRAMEF1 
Broad Tumor PortalPRAMEF1
OASIS PortalPRAMEF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF1
DgiDB (Drug Gene Interaction Database)PRAMEF1
DoCM (Curated mutations)PRAMEF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF1 (select a term)
intoGenPRAMEF1
Cancer3DPRAMEF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF1
Genetic Testing Registry PRAMEF1
NextProtO95521 [Medical]
TSGene65121
GENETestsPRAMEF1
Target ValidationPRAMEF1
Huge Navigator PRAMEF1 [HugePedia]
snp3D : Map Gene to Disease65121
BioCentury BCIQPRAMEF1
ClinGenPRAMEF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65121
Chemical/Pharm GKB GenePA142671138
Clinical trialPRAMEF1
Miscellaneous
canSAR (ICR)PRAMEF1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF1
EVEXPRAMEF1
GoPubMedPRAMEF1
iHOPPRAMEF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:06:25 CET 2017

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