Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRAMEF10 (PRAME family member 10)

Identity

Other alias-
HGNC (Hugo) PRAMEF10
LocusID (NCBI) 343071
Atlas_Id 56507
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12892896 and ends at 12898270 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF10   27997
Cards
Entrez_Gene (NCBI)PRAMEF10  343071  PRAME family member 10
Aliases
GeneCards (Weizmann)PRAMEF10
Ensembl hg19 (Hinxton)ENSG00000187545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187545 [Gene_View]  chr1:12892896-12898270 [Contig_View]  PRAMEF10 [Vega]
ICGC DataPortalENSG00000187545
TCGA cBioPortalPRAMEF10
AceView (NCBI)PRAMEF10
Genatlas (Paris)PRAMEF10
WikiGenes343071
SOURCE (Princeton)PRAMEF10
Genetics Home Reference (NIH)PRAMEF10
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF10  -     chr1:12892896-12898270 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF10  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF10 - 1p36.21 [CytoView hg19]  PRAMEF10 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF10 [Mapview hg19]  PRAMEF10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL049682 BC112208 BC112210
RefSeq transcript (Entrez)NM_001039361
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF10
Cluster EST : UnigeneHs.684629 [ NCBI ]
CGAP (NCI)Hs.684629
Alternative Splicing GalleryENSG00000187545
Gene ExpressionPRAMEF10 [ NCBI-GEO ]   PRAMEF10 [ EBI - ARRAY_EXPRESS ]   PRAMEF10 [ SEEK ]   PRAMEF10 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343071
GTEX Portal (Tissue expression)PRAMEF10
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60809   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60809  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60809
Splice isoforms : SwissVarO60809
PhosPhoSitePlusO60809
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF10
DMDM Disease mutations343071
Blocks (Seattle)PRAMEF10
SuperfamilyO60809
Human Protein AtlasENSG00000187545
Peptide AtlasO60809
IPIIPI00719148   
Protein Interaction databases
DIP (DOE-UCLA)O60809
IntAct (EBI)O60809
FunCoupENSG00000187545
BioGRIDPRAMEF10
STRING (EMBL)PRAMEF10
ZODIACPRAMEF10
Ontologies - Pathways
QuickGOO60809
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF10
Atlas of Cancer Signalling NetworkPRAMEF10
Wikipedia pathwaysPRAMEF10
Orthology - Evolution
OrthoDB343071
GeneTree (enSembl)ENSG00000187545
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF10
HOVERGENO60809
HOGENOMO60809
Homologs : HomoloGenePRAMEF10
Homology/Alignments : Family Browser (UCSC)PRAMEF10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF10
dbVarPRAMEF10
ClinVarPRAMEF10
1000_GenomesPRAMEF10 
Exome Variant ServerPRAMEF10
ExAC (Exome Aggregation Consortium)PRAMEF10 (select the gene name)
Genetic variants : HAPMAP343071
Genomic Variants (DGV)PRAMEF10 [DGVbeta]
DECIPHERPRAMEF10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF10 
Mutations
ICGC Data PortalPRAMEF10 
TCGA Data PortalPRAMEF10 
Broad Tumor PortalPRAMEF10
OASIS PortalPRAMEF10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF10
DgiDB (Drug Gene Interaction Database)PRAMEF10
DoCM (Curated mutations)PRAMEF10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF10 (select a term)
intoGenPRAMEF10
Cancer3DPRAMEF10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF10
Genetic Testing Registry PRAMEF10
NextProtO60809 [Medical]
TSGene343071
GENETestsPRAMEF10
Target ValidationPRAMEF10
Huge Navigator PRAMEF10 [HugePedia]
snp3D : Map Gene to Disease343071
BioCentury BCIQPRAMEF10
ClinGenPRAMEF10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343071
Chemical/Pharm GKB GenePA142671147
Clinical trialPRAMEF10
Miscellaneous
canSAR (ICR)PRAMEF10 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF10
EVEXPRAMEF10
GoPubMedPRAMEF10
iHOPPRAMEF10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:50:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.