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PRAMEF11 (PRAME family member 11)

Identity

Other alias-
HGNC (Hugo) PRAMEF11
LocusID (NCBI) 440560
Atlas_Id 56556
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12824760 and ends at 12831410 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF11   14086
Cards
Entrez_Gene (NCBI)PRAMEF11  440560  PRAME family member 11
Aliases
GeneCards (Weizmann)PRAMEF11
Ensembl hg19 (Hinxton)ENSG00000239810 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239810 [Gene_View]  chr1:12824760-12831410 [Contig_View]  PRAMEF11 [Vega]
ICGC DataPortalENSG00000239810
TCGA cBioPortalPRAMEF11
AceView (NCBI)PRAMEF11
Genatlas (Paris)PRAMEF11
WikiGenes440560
SOURCE (Princeton)PRAMEF11
Genetics Home Reference (NIH)PRAMEF11
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF11  -     chr1:12824760-12831410 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF11  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF11 - 1p36.21 [CytoView hg19]  PRAMEF11 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF11 [Mapview hg19]  PRAMEF11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL049680 BC144426
RefSeq transcript (Entrez)NM_001146344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF11
Cluster EST : UnigeneHs.551617 [ NCBI ]
CGAP (NCI)Hs.551617
Alternative Splicing GalleryENSG00000239810
Gene ExpressionPRAMEF11 [ NCBI-GEO ]   PRAMEF11 [ EBI - ARRAY_EXPRESS ]   PRAMEF11 [ SEEK ]   PRAMEF11 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440560
GTEX Portal (Tissue expression)PRAMEF11
Human Protein AtlasENSG00000239810-PRAMEF11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60813   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60813  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60813
Splice isoforms : SwissVarO60813
PhosPhoSitePlusO60813
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF11
DMDM Disease mutations440560
Blocks (Seattle)PRAMEF11
SuperfamilyO60813
Human Protein Atlas [tissue]ENSG00000239810-PRAMEF11 [tissue]
Peptide AtlasO60813
IPIIPI00929410   IPI01014608   
Protein Interaction databases
DIP (DOE-UCLA)O60813
IntAct (EBI)O60813
FunCoupENSG00000239810
BioGRIDPRAMEF11
STRING (EMBL)PRAMEF11
ZODIACPRAMEF11
Ontologies - Pathways
QuickGOO60813
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF11
Atlas of Cancer Signalling NetworkPRAMEF11
Wikipedia pathwaysPRAMEF11
Orthology - Evolution
OrthoDB440560
GeneTree (enSembl)ENSG00000239810
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF11
HOVERGENO60813
HOGENOMO60813
Homologs : HomoloGenePRAMEF11
Homology/Alignments : Family Browser (UCSC)PRAMEF11
Gene fusions - Rearrangements
Tumor Fusion PortalPRAMEF11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF11
dbVarPRAMEF11
ClinVarPRAMEF11
1000_GenomesPRAMEF11 
Exome Variant ServerPRAMEF11
ExAC (Exome Aggregation Consortium)ENSG00000239810
GNOMAD BrowserENSG00000239810
Genetic variants : HAPMAP440560
Genomic Variants (DGV)PRAMEF11 [DGVbeta]
DECIPHERPRAMEF11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF11 
Mutations
ICGC Data PortalPRAMEF11 
TCGA Data PortalPRAMEF11 
Broad Tumor PortalPRAMEF11
OASIS PortalPRAMEF11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF11
DgiDB (Drug Gene Interaction Database)PRAMEF11
DoCM (Curated mutations)PRAMEF11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF11 (select a term)
intoGenPRAMEF11
Cancer3DPRAMEF11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRAMEF11
MedgenPRAMEF11
Genetic Testing Registry PRAMEF11
NextProtO60813 [Medical]
TSGene440560
GENETestsPRAMEF11
Target ValidationPRAMEF11
Huge Navigator PRAMEF11 [HugePedia]
snp3D : Map Gene to Disease440560
BioCentury BCIQPRAMEF11
ClinGenPRAMEF11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440560
Chemical/Pharm GKB GenePA142671148
Clinical trialPRAMEF11
Miscellaneous
canSAR (ICR)PRAMEF11 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF11
EVEXPRAMEF11
GoPubMedPRAMEF11
iHOPPRAMEF11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:30:07 CET 2017

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