Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRAMEF12 (PRAME family member 12)

Identity

Alias_symbol (synonym)OTTHUMG00000001927
Other alias-
HGNC (Hugo) PRAMEF12
LocusID (NCBI) 390999
Atlas_Id 56243
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12774848 and ends at 12777905 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF12   22125
Cards
Entrez_Gene (NCBI)PRAMEF12  390999  PRAME family member 12
Aliases
GeneCards (Weizmann)PRAMEF12
Ensembl hg19 (Hinxton)ENSG00000116726 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116726 [Gene_View]  chr1:12774848-12777905 [Contig_View]  PRAMEF12 [Vega]
ICGC DataPortalENSG00000116726
TCGA cBioPortalPRAMEF12
AceView (NCBI)PRAMEF12
Genatlas (Paris)PRAMEF12
WikiGenes390999
SOURCE (Princeton)PRAMEF12
Genetics Home Reference (NIH)PRAMEF12
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF12  -     chr1:12774848-12777905 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF12  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF12 - 1p36.21 [CytoView hg19]  PRAMEF12 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF12 [Mapview hg19]  PRAMEF12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI339502 AI339503 BC152934
RefSeq transcript (Entrez)NM_001080830
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF12
Cluster EST : UnigeneHs.156406 [ NCBI ]
CGAP (NCI)Hs.156406
Alternative Splicing GalleryENSG00000116726
Gene ExpressionPRAMEF12 [ NCBI-GEO ]   PRAMEF12 [ EBI - ARRAY_EXPRESS ]   PRAMEF12 [ SEEK ]   PRAMEF12 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390999
GTEX Portal (Tissue expression)PRAMEF12
Human Protein AtlasENSG00000116726-PRAMEF12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95522   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95522  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95522
Splice isoforms : SwissVarO95522
PhosPhoSitePlusO95522
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF12
DMDM Disease mutations390999
Blocks (Seattle)PRAMEF12
SuperfamilyO95522
Human Protein Atlas [tissue]ENSG00000116726-PRAMEF12 [tissue]
Peptide AtlasO95522
IPIIPI00031315   
Protein Interaction databases
DIP (DOE-UCLA)O95522
IntAct (EBI)O95522
FunCoupENSG00000116726
BioGRIDPRAMEF12
STRING (EMBL)PRAMEF12
ZODIACPRAMEF12
Ontologies - Pathways
QuickGOO95522
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF12
Atlas of Cancer Signalling NetworkPRAMEF12
Wikipedia pathwaysPRAMEF12
Orthology - Evolution
OrthoDB390999
GeneTree (enSembl)ENSG00000116726
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF12
HOVERGENO95522
HOGENOMO95522
Homologs : HomoloGenePRAMEF12
Homology/Alignments : Family Browser (UCSC)PRAMEF12
Gene fusions - Rearrangements
Fusion: Tumor Portal PRAMEF12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF12
dbVarPRAMEF12
ClinVarPRAMEF12
1000_GenomesPRAMEF12 
Exome Variant ServerPRAMEF12
ExAC (Exome Aggregation Consortium)ENSG00000116726
GNOMAD BrowserENSG00000116726
Genetic variants : HAPMAP390999
Genomic Variants (DGV)PRAMEF12 [DGVbeta]
DECIPHERPRAMEF12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF12 
Mutations
ICGC Data PortalPRAMEF12 
TCGA Data PortalPRAMEF12 
Broad Tumor PortalPRAMEF12
OASIS PortalPRAMEF12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF12
DgiDB (Drug Gene Interaction Database)PRAMEF12
DoCM (Curated mutations)PRAMEF12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF12 (select a term)
intoGenPRAMEF12
Cancer3DPRAMEF12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF12
Genetic Testing Registry PRAMEF12
NextProtO95522 [Medical]
TSGene390999
GENETestsPRAMEF12
Target ValidationPRAMEF12
Huge Navigator PRAMEF12 [HugePedia]
snp3D : Map Gene to Disease390999
BioCentury BCIQPRAMEF12
ClinGenPRAMEF12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390999
Chemical/Pharm GKB GenePA145148158
Clinical trialPRAMEF12
Miscellaneous
canSAR (ICR)PRAMEF12 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF12
EVEXPRAMEF12
GoPubMedPRAMEF12
iHOPPRAMEF12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:06:25 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.