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PRAMEF13 (PRAME family member 13)

Identity

Alias_symbol (synonym)OTTHUMG00000008034
Other alias-
HGNC (Hugo) PRAMEF13
LocusID (NCBI) 400736
Atlas_Id 77765
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13196188 and ends at 13201409 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF13   13262
Cards
Entrez_Gene (NCBI)PRAMEF13  400736  PRAME family member 13
Aliases
GeneCards (Weizmann)PRAMEF13
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:13196188-13201409 [Contig_View]  PRAMEF13 [Vega]
TCGA cBioPortalPRAMEF13
AceView (NCBI)PRAMEF13
Genatlas (Paris)PRAMEF13
WikiGenes400736
SOURCE (Princeton)PRAMEF13
Genetics Home Reference (NIH)PRAMEF13
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF13  -     chr1:13196188-13201409 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF13  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF13 - 1p36.21 [CytoView hg19]  PRAMEF13 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF13 [Mapview hg19]  PRAMEF13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001291380
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_005159 NT_187517 NW_012132914
Consensus coding sequences : CCDS (NCBI)PRAMEF13
Gene ExpressionPRAMEF13 [ NCBI-GEO ]   PRAMEF13 [ EBI - ARRAY_EXPRESS ]   PRAMEF13 [ SEEK ]   PRAMEF13 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400736
GTEX Portal (Tissue expression)PRAMEF13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWM6
Splice isoforms : SwissVarQ5VWM6
PhosPhoSitePlusQ5VWM6
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF13
DMDM Disease mutations400736
Blocks (Seattle)PRAMEF13
SuperfamilyQ5VWM6
Peptide AtlasQ5VWM6
IPIIPI00646233   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWM6
IntAct (EBI)Q5VWM6
BioGRIDPRAMEF13
STRING (EMBL)PRAMEF13
ZODIACPRAMEF13
Ontologies - Pathways
QuickGOQ5VWM6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRAMEF13
Atlas of Cancer Signalling NetworkPRAMEF13
Wikipedia pathwaysPRAMEF13
Orthology - Evolution
OrthoDB400736
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF13
HOVERGENQ5VWM6
HOGENOMQ5VWM6
Homologs : HomoloGenePRAMEF13
Homology/Alignments : Family Browser (UCSC)PRAMEF13
Gene fusions - Rearrangements
Tumor Fusion PortalPRAMEF13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF13
dbVarPRAMEF13
ClinVarPRAMEF13
1000_GenomesPRAMEF13 
Exome Variant ServerPRAMEF13
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP400736
Genomic Variants (DGV)PRAMEF13 [DGVbeta]
DECIPHERPRAMEF13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF13 
Mutations
ICGC Data PortalPRAMEF13 
TCGA Data PortalPRAMEF13 
Broad Tumor PortalPRAMEF13
OASIS PortalPRAMEF13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRAMEF13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF13
DgiDB (Drug Gene Interaction Database)PRAMEF13
DoCM (Curated mutations)PRAMEF13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF13 (select a term)
intoGenPRAMEF13
Cancer3DPRAMEF13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRAMEF13
MedgenPRAMEF13
Genetic Testing Registry PRAMEF13
NextProtQ5VWM6 [Medical]
TSGene400736
GENETestsPRAMEF13
Target ValidationPRAMEF13
Huge Navigator PRAMEF13 [HugePedia]
snp3D : Map Gene to Disease400736
BioCentury BCIQPRAMEF13
ClinGenPRAMEF13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400736
Chemical/Pharm GKB GenePA145148169
Clinical trialPRAMEF13
Miscellaneous
canSAR (ICR)PRAMEF13 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF13
EVEXPRAMEF13
GoPubMedPRAMEF13
iHOPPRAMEF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:27 CET 2017

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